PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G23961

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YC

Protein Properties

Length: 275aa MW: 30429 Da PI: 4.7825

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G23961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.4	7.5e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ +fdfl div + Ro07_G23961 6 DTRFPAARIKKIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYDITLKRGAKTMNSLHLKQCVKTFSVFDFLKDIVSK 86 5789**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YDITLKRGAK 60 TMNSLHLKQC VKTFSVFDFL KDIVSKVPDL GGSDAAGEDC PVAKRRKVAA DDEDTESDDE 120 AKRSKMMNDP GNTISSGRGR GRGRGRGRKV VADDEDTDTD DESKTSMTVP DAGNMIGSGS 180 GRGRGRGRGR PRGRPRGSRT VGRETSARIE KYEDDLDIDK CDDKLDESLE MLDDATEPKG 240 SKENISGMET MAIDPMQLAN LTRRIDEDEE DYDED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RGRGRGRGRG
2	138	148	RGRGRGRGRGR
3	182	192	RGRGRGRGRGR
4	184	194	RGRGRGRGRGR
5	186	196	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	4e-54	NF-YC family protein