PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G22104
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 442aa    MW: 48453.1 Da    PI: 10.2114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G22104genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.37.3e-121562271386
     trihelix  13 arremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  a++ ++   +r+klk+++We+v++++    +  +  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Ro07_G22104 156 AYEAKWVLRNRAKLKGHDWEDVARHVssraSCSKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 227
                  6788899999****************854444455566679****************99997......4699999986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MVWQLAVGTK ATNNNSKAEQ VCANRIEAVI FWNSLALLKG SHPNTCSSGD ESTKSFKKGI  60
EGGPKKEAQW RRTGGDGDVL GGGIGMEWVT VPCDRPTTTT TLIGPSGCLG WLHINANSQN  120
NPTTAIKPTC SLSHNSTRNP KKSEKEKFTG SHHLLAYEAK WVLRNRAKLK GHDWEDVARH  180
VSSRASCSKS PKTQTQCKNK IESMKKRYRS ESATADGSSW PLYPRLDLLL RGSGPPPPPT  240
AAAVIAAVAP PPPLPQQPPL PPALAHHSNH ALMLLEPSVP VSPPPQPPPP PPHLATAQNS  300
YGSDGGDRDA KEEGVGMKLS DHASDKNPLE IDSSTPALYS DKEKLRSKRM KRKIEKKTRR  360
RREELEIAES IRWLAEVVVR SEQSRMDTMR EIERMRVEAE AKRGEMDLKR TEIIANTQLE  420
IARIFAAGVG KGVDSSLRIG RS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-84Trihelix family protein