PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G21930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24775.1 Da PI: 8.0845 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.4 | 5.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s Ro07_G21930 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 80.8 | 3.2e-27 | 80 | 172 | 6 | 97 |
K-box 6 gks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + +e+++++l+qe++ + k+ie L+ ++R+llGe+++ ++++eLq+LeqqLe+s+ +iR++K+++++eqie+l++ke+ l en++L +k Ro07_G21930 80 K-KsvSTEQNEQQLKQEASGMMKQIEHLEVSKRKLLGESVGLCTIEELQELEQQLETSVHRIRARKTQVFKEQIEQLREKERVLAAENERLFEK 172 2.23589999********************************************************************************9887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 SMQGTIERYE KHTKDNQANK KSVSTEQNEQ QLKQEASGMM KQIEHLEVSK RKLLGESVGL 120 CTIEELQELE QQLETSVHRI RARKTQVFKE QIEQLREKER VLAAENERLF EKCGAMQQRE 180 PETEQRENLA SNESSQSSDV ETELLHLAYI HMTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | LREKER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-82 | MIKC_MADS family protein |