PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G21422
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 273aa    MW: 30034.4 Da    PI: 4.6513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G21422genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20120170255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ kl+g
  Ro07_G21422 120 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDAALAYDQAAFKLRG 170
                  69*******.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MFGEIDLESD FALLESIRQH LLDDNFDTTF VLQEASPTAS GSPPPMYCRS FSFGTLFSTE  60
NWNDLPLKAD SDSDDIVVSG AIPDEVTDSP VKSEPRELVE VLEEERVVAR ETHVPSSGRH  120
FRGVRRRPWG KYAAEIRDPK KNGARVWLGT YETAEDAALA YDQAAFKLRG SKAKLNFPHL  180
IGSAGSVPVR ITPKRRSPES SSSSSFSTSE SGSPKPKRRN LGADPVAVEA ESGSTSRVEM  240
AEMSQLAVVD QWLNDFNTTV VSMPQEVMIS GYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-40ERF family protein