PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G17544

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 317aa MW: 34844.9 Da PI: 8.0333

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G17544	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	143	197	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++tkeq Le+ F++++++++++++eLA+kl+L+ rqV vWFqNrRa+ k Ro07_G17544 143 KKKLRLTKEQSLLLEDKFKEHHTLNTRQKQELAQKLNLSPRQVEVWFQNRRARTK 197 788899***********************************************98 PP
2	HD-ZIP_I/II	118.5	3.6e-38	143	232	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ lLE++F+e+++L++++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L++++++l+een+rL+kev+eLr +l Ro07_G17544 143 KKKLRLTKEQSLLLEDKFKEHHTLNTRQKQELAQKLNLSPRQVEVWFQNRRARTKLKQTEVDCEQLRKCCENLTEENRRLQKEVQELR-AL 232 59*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MLSILGREKK MGEKNDGLGL SLGLGCGANQ SSSSSFHLNL MQNASEANHN HRQHRIFGIL 60 GFSDRNVTSF RSFRREIDVN QAPPVADFED ENGVSSPNST VSSLSGKRSE RETIGDENEA 120 ERASCSLGGS DDDDGNGGGD MSKKKLRLTK EQSLLLEDKF KEHHTLNTRQ KQELAQKLNL 180 SPRQVEVWFQ NRRARTKLKQ TEVDCEQLRK CCENLTEENR RLQKEVQELR ALKLSPQLYM 240 QMNPPTTLTM CPSCQCVGVS SSSSSSSAAA PSTAPATGPT SHLGQPTIHR PFPISPWATL 300 PIPHHRPVDA PAPTSGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	SKKKLRL
2	192	200	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	9e-75	HD-ZIP family protein