PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G17381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | GATA | ||||||||
Protein Properties | Length: 235aa MW: 26327.9 Da PI: 6.1116 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.4 | 4.1e-18 | 139 | 173 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l Ro07_G17381 139 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 173 *******************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MEDMYGVSSS SASASTQAQD YFPVDDLLDL SNDEIFSNSS TSSSTDSYSN HHHYAPPPPQ 60 HPTALFHPPT TDFTNALCLP SEDAAELEWL SRFVDDSFTD FPAPELSGSM SLSNDKSFPN 120 RGHTKPMRQA EGSESIRRCT HCASEKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA 180 ASPTFVLTQH SNSHRKVMEL RRQKEVSQQP PEEQQSHQQQ QFYLHPNGFQ VYFGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 6e-64 | GATA family protein |