PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G17018
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 997aa    MW: 112233 Da    PI: 4.9863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G17018genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.43.9e-812155502345
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ve Ll  Ae v  ++ e+a++lL+    l+s +g+p+qR+++yf eAL++++ r++ ++ +  ++ + ++ ++ +      + ++  P+ ++++++  
  Ro07_G17018 215 VEFLLGSAEKVGYQQYERASKLLNLCDMLSSDRGNPVQRVVFYFCEALREKIDRETGRTTQNKQSFDMDK-TMRSPNETSLACHKKIPFSQVAQFAGI 311
                  7789999***********************************************5444444443333332.2222222333478999*********** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  qaI+e v++ ++vH+iD++i  G+QW  L+qaLasR+ +   l+i +vg    + ke++++tg+ L++fA++++vpf+f+v+++ ++ dl+ ++++++
  Ro07_G17018 312 QAIVEKVAEVKKVHVIDLEIRTGVQWTVLMQALASRDLPLELLKISAVGT---TCKESIQNTGKWLESFAKTMNVPFSFKVVMVPDMLDLKEDMFELD 406
                  **************************************************...69**************************9999************* PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++E++aV +++ l +++ ++  les    v++++k++ P ++vv+e ea+hns+ F++rf+eal ++sa+fd++e+ + ++   r+++E +++g+ i+
  Ro07_G17018 407 SEETVAVYCQFVLRSMVPQPDRLES----VMRVIKNIHPCIIVVTEVEANHNSPVFVTRFIEALFFFSACFDCVETCIEQNGAIRKSLESQYFGNGIK 500
                  ****************977777777....*************************************************9999**************** PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                  n+va+eg+er+ rh +   Wr+ + + G+++++ls++   qa+l+ ++++
  Ro07_G17018 501 NIVATEGDERKIRHVKIDVWRAFFLRYGMEEIELSSSSLYQAELVTKNFP 550
                  ********************************************999988 PP
2GRAS257.26e-796029761374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevs...Pilkfs 94 
                  l +lLl++A++v +++  +a++l +  + l+s++g+++qR++ yf++AL++r    ++ +++k  ++++   ++ ++++a   +f+ ++   P+++++
  Ro07_G17018 602 LAHLLLAFADMVGKQQYDRARKLQNLCHFLSSSTGNTVQRVVYYFAKALEERTDMeTGRNTCKGSESKDLVAMHLEKSIACCPAFFACFlelPFYQVT 699
                  579******************988888888**********************9886788899988999888888999999988888876666****** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +++  qaI+e+v++++r+H iD+ is G++   L+qaLasR e+p  +l++T+vgs  + s+++le tg+rLa+fAe+l++pf+f++ +++ ++dl+ 
  Ro07_G17018 700 QFAGIQAIVESVASAKRIHFIDLAISSGGHCTVLMQALASRYEQPIdMLKVTAVGS-GTASRQKLEDTGKRLAQFAEALDLPFSFKIAMVTYMNDLNE 796
                  *****************************************966655*********.5579**************************9999******* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  ++++ + gEa+aV ++l+  + +    +l+++ ++ + ++++l+P ++v++e ea++ s+ F erf eal yysa fd+l++ + r s  r+ +E+ +
  Ro07_G17018 797 DAFESEDGEATAVYCSLMRSSSM---RTLPDCLESAITALRKLNPCLMVITETEANLYSPVFEERFNEALFYYSAYFDCLDVCMDRCSPYRRELEETY 891
                  ***************99666665...778888899*************************************************************** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l+++i+n++a e++ r+ rh +   Wr+ +e++G+ + +ls +   qa+l  ++++ ++  +++ + ++l+ gWk+ p++s+SaW+
  Ro07_G17018 892 LSQQIKNIIASEEE-RILRHMKIDIWRSLFEKFGMVESELSLSSLYQADLTAKQFAcGKSCTLDMNGKCLTVGWKGTPILSLSAWK 976
                  **********9987.7****************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    
MANAMFSFGE FNLGGVEDKL SSTDFESKEE ENIGGKQVYE AEHWGGFGTL CSSDYGFSDF  60
TKYQQDQQLS QLTSDYGFFD DMQFQFSALS PPLQACLKEI AKLENIPTLV PHVEPPKKEK  120
RESFSVAGLD LLNNYGSGFK RLNGERIVET SNPYYATCTE VESSKLSTEE IMRVAGARFI  180
RTASQVSDIP SMLSHPFELS FAGLSDDESR DVELVEFLLG SAEKVGYQQY ERASKLLNLC  240
DMLSSDRGNP VQRVVFYFCE ALREKIDRET GRTTQNKQSF DMDKTMRSPN ETSLACHKKI  300
PFSQVAQFAG IQAIVEKVAE VKKVHVIDLE IRTGVQWTVL MQALASRDLP LELLKISAVG  360
TTCKESIQNT GKWLESFAKT MNVPFSFKVV MVPDMLDLKE DMFELDSEET VAVYCQFVLR  420
SMVPQPDRLE SVMRVIKNIH PCIIVVTEVE ANHNSPVFVT RFIEALFFFS ACFDCVETCI  480
EQNGAIRKSL ESQYFGNGIK NIVATEGDER KIRHVKIDVW RAFFLRYGME EIELSSSSLY  540
QAELVTKNFP GGSSCTIKVM RVAGARFIQF SSQRYADDSI PKHVLGCTPL GLSDQEAKDV  600
ELAHLLLAFA DMVGKQQYDR ARKLQNLCHF LSSSTGNTVQ RVVYYFAKAL EERTDMETGR  660
NTCKGSESKD LVAMHLEKSI ACCPAFFACF LELPFYQVTQ FAGIQAIVES VASAKRIHFI  720
DLAISSGGHC TVLMQALASR YEQPIDMLKV TAVGSGTASR QKLEDTGKRL AQFAEALDLP  780
FSFKIAMVTY MNDLNEDAFE SEDGEATAVY CSLMRSSSMR TLPDCLESAI TALRKLNPCL  840
MVITETEANL YSPVFEERFN EALFYYSAYF DCLDVCMDRC SPYRRELEET YLSQQIKNII  900
ASEEERILRH MKIDIWRSLF EKFGMVESEL SLSSLYQADL TAKQFACGKS CTLDMNGKCL  960
TVGWKGTPIL SLSAWKFHAV NAKTSEYLMA TSYKAPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-49GRAS family protein