PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G14025

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 428aa MW: 46047.3 Da PI: 5.1558

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G14025	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6.1e-30	229	287	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ed ++++tY g+H+h+ Ro07_G14025 229 SDLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCSARKQVERSTEDSGMFVVTYAGDHTHP 287 799**********************998**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MADDDWDLYA VVRSCNSATS TATTTSNPIH HDGCSEEPSW MWDRVMKREE LETNDPPGGF 60 PNLESRAGAF QGLEEFYQPF FPNPTIDNTT TTTTSTSSYA AAGTIIPNSS TSFMSDFGGG 120 SSSSGQHQLQ QQQNNFVPAN TNTAISPHFN PGFTPVSGFG RFHEHQQLKQ LETPDHPQEL 180 IVPRRKAAVA LGGPLMPTMQ VPPQLIRPRK RKSQVKKVVC HLTADNLSSD LWAWRKYGQK 240 PIKGSPHPRN YYRCSSSKGC SARKQVERST EDSGMFVVTY AGDHTHPRPT HRNSLAGSTR 300 NKAAATTQKA KDSESPASVQ VLAAQGEDDE QTGNNNSVDG DKASEEAEDE EIEEDEDDEE 360 FLIPNMGVSE DIFLGMKQLG RTGSGGSTLG SLAVGTSGDA FSTKSSNLGS SWGANCSSSA 420 GATVGGGC

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MADDDWDLYA VVRSCNSATS TATTTSNPIH HDGCSEEPSW MWDRVMKREE LETNDPPGGF  60
PNLESRAGAF QGLEEFYQPF FPNPTIDNTT TTTTSTSSYA AAGTIIPNSS TSFMSDFGGG  120
SSSSGQHQLQ QQQNNFVPAN TNTAISPHFN PGFTPVSGFG RFHEHQQLKQ LETPDHPQEL  180
IVPRRKAAVA LGGPLMPTMQ VPPQLIRPRK RKSQVKKVVC HLTADNLSSD LWAWRKYGQK  240
PIKGSPHPRN YYRCSSSKGC SARKQVERST EDSGMFVVTY AGDHTHPRPT HRNSLAGSTR  300
NKAAATTQKA KDSESPASVQ VLAAQGEDDE QTGNNNSVDG DKASEEAEDE EIEEDEDDEE  360
FLIPNMGVSE DIFLGMKQLG RTGSGGSTLG SLAVGTSGDA FSTKSSNLGS SWGANCSSSA  420
GATVGGGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-52	WRKY family protein