PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G13018
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 309aa    MW: 35650.9 Da    PI: 9.188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G13018genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.5e-19861631398
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  s  l +p +f++++ g+ +     +l+d++g+ W v+l  + k++  ++ kGWk+Fvk++ L+egDf+vF +dg+s+f   v++++
  Ro07_G13018  86 SEKLKIPTDFVNHFYGP-A---LCKLKDPNGKCWAVEL--EEKDNNLFFHKGWKKFVKDHFLDEGDFLVFNYDGKSRF--EVTIYE 163
                  45699******555444.3...589*************..*********************************99999..777665 PP
2B353.54.4e-17211294998
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++ +l++p + a++ g+   +++t+ l+d+++rsW+ kl+   ++gr ++ kGW++  kan++kegD++vF++++r      v++fr
  Ro07_G13018 211 ENHRLYQLSIPITLARAKGLT--SKQTIELRDPQNRSWDAKLN-IMQDGRLLMNKGWRSCSKANQIKEGDTIVFEFVKRYA---QVHIFR 294
                  45556789**********998..4559***************4.566678*************************988533...477776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MTSELTGHRN RNRAVNSAQD SDCSKLEHKR HRIIYLFWSF KAFPSITSAA ASDFTVERVL  60
QFLFFLKPEV PVPAAFFQVL VGGHFSEKLK IPTDFVNHFY GPALCKLKDP NGKCWAVELE  120
EKDNNLFFHK GWKKFVKDHF LDEGDFLVFN YDGKSRFEVT IYEKSACEME LEAAKTERSG  180
NLAGGRDYIM PGETRIIEFK SKHSCFKRTM ENHRLYQLSI PITLARAKGL TSKQTIELRD  240
PQNRSWDAKL NIMQDGRLLM NKGWRSCSKA NQIKEGDTIV FEFVKRYAQV HIFRVEGCDV  300
VLTGPNMTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-20B3 family protein