PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G31640.1 | ||||||||
Common Name | F28M20.170, REM5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 352aa MW: 40075.4 Da PI: 9.6612 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.5 | 7.8e-21 | 22 | 98 | 11 | 95 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +ks+ + +p kf+++h +gk +e+ t+ l++ +s r+W+vk+ ++++ lt+GWkeFv+a++L++gDfvvFk++g++ f +v+ AT4G31640.1 22 FKSH-IKIPVKFFSKHiEGK-HEGNTVYLRSyPSRRTWKVKM--EGHK----LTEGWKEFVEAHDLRVGDFVVFKHKGDMLF--HVT 98 6666.99*********7555.5677*****************..6666....***********************9998888..665 PP | |||||||
2 | B3 | 73.1 | 3.3e-23 | 152 | 246 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++ +++++l+++++ +p++fa+++g++ ++ +++l+de+g++We ++ + ksgr+++++GW + + an+L++gD+++Fkl ++ + +v++++++ AT4G31640.1 152 FSQSVTASNLTRDLVGIPRDFAKRYGLNIGRH-EIVLMDEEGNTWESEV-KSYKSGRVFIAGGWTSLCTANKLEVGDSCTFKLLRN-PKIPVFRLCSR 246 678899*******************9997665.****************.47777889************************9985.44489999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-24 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-22 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.634 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.66E-20 | 12 | 100 | No hit | No description |
SMART | SM01019 | 1.6E-25 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-15 | 24 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-23 | 144 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-23 | 145 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.579 | 151 | 246 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.85E-20 | 151 | 245 | No hit | No description |
SMART | SM01019 | 1.1E-29 | 152 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-22 | 152 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MKNPTLFAPK SPHFFQPILP GFKSHIKIPV KFFSKHIEGK HEGNTVYLRS YPSRRTWKVK 60 MEGHKLTEGW KEFVEAHDLR VGDFVVFKHK GDMLFHVTAI GPSCCEVQYA PSRSHDRNEE 120 SDEIGESSRN EKIIEENVKT EPDQFSPDLT CFSQSVTASN LTRDLVGIPR DFAKRYGLNI 180 GRHEIVLMDE EGNTWESEVK SYKSGRVFIA GGWTSLCTAN KLEVGDSCTF KLLRNPKIPV 240 FRLCSRPKAG AEARPHKRSR VQSSSGGSRQ KHDVRQKLDE EGGPSRCTRS SNKATGDQEK 300 LQQTQSCFIF DHVAKVKQSV EDTLNSIRRF RAKLETKEHN LEALLQETKT KL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30689102 | 0.0 | ||||
Expression Atlas | AT4G31640 | - | ||||
AtGenExpress | AT4G31640 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G31640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G31640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441074 | 0.0 | AJ441074.1 Arabidopsis thaliana mRNA for putative auxin response factor 22 (arf22 gene). | |||
GenBank | AY142531 | 0.0 | AY142531.1 Arabidopsis thaliana unknown protein (At4g31640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194892.1 | 0.0 | transcriptional factor B3 family protein | ||||
Swissprot | Q9SB80 | 0.0 | REM5_ARATH; B3 domain-containing protein REM5 | ||||
TrEMBL | A0A178V197 | 0.0 | A0A178V197_ARATH; Uncharacterized protein | ||||
STRING | AT4G31640.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT4G31640.1 |
Entrez Gene | 829292 |
iHOP | AT4G31640 |
wikigenes | AT4G31640 |
Publications ? help Back to Top | |||
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