PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G12028
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 174aa    MW: 18824.8 Da    PI: 5.3055
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G12028genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.41.4e-5528121194
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy+epl++yl++yre +
  Ro07_G12028  28 VREQDRYLPIANISRIMKKALPQNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLRIYLARYREGD 121
                  69*****************************************************************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MAEAPTSPAG GSHESGGEQS PQNGSSSVRE QDRYLPIANI SRIMKKALPQ NGKIAKDAKD  60
TVQECVSEFI SFVTSEASDK CQKEKRKTIN GDDLLWAMAT LGFEDYIEPL RIYLARYREG  120
DAKGSARGGE GSAKGNPVGA LPGQNSQFVH QGPLNYVNPQ EDYYVPLNNM GNGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.13e-79NF-YB family protein