PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09411

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 690aa MW: 76626.4 Da PI: 9.1178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	75	96	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Ro07_G09411 75 KCDKCPREFCSSINYRRHIRVH 96 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MPIAKLKASN TDAMKSEEGN DSLDTIIRQV AKEPSISFSR AGDSPVPWIQ LLHALDQQEL 60 PGWPLHSPIK VQLQKCDKCP REFCSSINYR RHIRVHHRLK KLDKDSTKNK DLLGAFWDKL 120 SSEKAKESVS FKNVNLEEVA GSSIIKALTT LIRKPGFTSL PHIYLKAGSA LLDIVQARPS 180 RFPISSQELF SILDDASEKT FLSGTATSMQ RYIFDRDAGK VGLEPKNLVA CTSFLVEQKL 240 VKAWHACKDA EALRLQKLLV EEEEAAQKRQ AELLERKRQK KLRQKEQKAK DQEKVNFKES 300 VDEPLEETSS HSTTFDSESP ISDVLDHVHS SLEAFQHSNT NENLDPESQT EFSCGQADPS 360 NGSNVERRTV QGSGSRRAVA RWQVLPKSQR CVPNGFHAGQ SSQTSKLPSM QNHGSYRDSR 420 AVSGSNKVWS RKPKPEFDGG SLKAGVQKNA IEPDQIKNHE VLIGSISVTL GNCCQESSNL 480 AGFLDDGPLE HQMPKNNVQE KTNKLDLVQS STNRSTVKLW RPVSRNGTKG GPMPVQNSSR 540 ESEMDVAAEK GNSRIISNGN CPRSCDMDSH NDGIVNGSTL TREAGRLGFS SHAAKDFLAQ 600 RWKEAIAGDH VQLVLFQDSE PPRCPDSDCE VAVTHSLRFK RSILGNAENR LVNVEAIESP 660 IAVATKVKYR SKKPEKGVKI KYIPKQNTVT

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MPIAKLKASN TDAMKSEEGN DSLDTIIRQV AKEPSISFSR AGDSPVPWIQ LLHALDQQEL  60
PGWPLHSPIK VQLQKCDKCP REFCSSINYR RHIRVHHRLK KLDKDSTKNK DLLGAFWDKL  120
SSEKAKESVS FKNVNLEEVA GSSIIKALTT LIRKPGFTSL PHIYLKAGSA LLDIVQARPS  180
RFPISSQELF SILDDASEKT FLSGTATSMQ RYIFDRDAGK VGLEPKNLVA CTSFLVEQKL  240
VKAWHACKDA EALRLQKLLV EEEEAAQKRQ AELLERKRQK KLRQKEQKAK DQEKVNFKES  300
VDEPLEETSS HSTTFDSESP ISDVLDHVHS SLEAFQHSNT NENLDPESQT EFSCGQADPS  360
NGSNVERRTV QGSGSRRAVA RWQVLPKSQR CVPNGFHAGQ SSQTSKLPSM QNHGSYRDSR  420
AVSGSNKVWS RKPKPEFDGG SLKAGVQKNA IEPDQIKNHE VLIGSISVTL GNCCQESSNL  480
AGFLDDGPLE HQMPKNNVQE KTNKLDLVQS STNRSTVKLW RPVSRNGTKG GPMPVQNSSR  540
ESEMDVAAEK GNSRIISNGN CPRSCDMDSH NDGIVNGSTL TREAGRLGFS SHAAKDFLAQ  600
RWKEAIAGDH VQLVLFQDSE PPRCPDSDCE VAVTHSLRFK RSILGNAENR LVNVEAIESP  660
IAVATKVKYR SKKPEKGVKI KYIPKQNTVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-138	C2H2 family protein