PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07879

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 378aa MW: 42987.8 Da PI: 6.3402

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07879	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166	1.3e-51	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd ++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + s Ro07_G07879 15 VPPGFRFHPTEEELLQYYLKKKVSSQRIDL-DVIRDVDLNKLEPWDVQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKVISS- 110 69**************************.9***********964444222455******************************9999. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g++ktLvfykgrap+g+k+dW+mheyrl Ro07_G07879 111 NYRRIGMRKTLVFYKGRAPHGHKSDWIMHEYRL 143 9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MTENVSITVN GQSQVPPGFR FHPTEEELLQ YYLKKKVSSQ RIDLDVIRDV DLNKLEPWDV 60 QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATTAGFWK ATGRDKVISS NYRRIGMRKT 120 LVFYKGRAPH GHKSDWIMHE YRLDDNTSNI TNVIDVVEAA KEEGWVVCRI FKKKHLHKTL 180 DSPILGVTTS SITTDITSTH QHFDNSCDDN DEGALEHILE CMGSRTCKEE INEANNSLIM 240 NHIDGFHNDD RFLKLPSLES PKSSAELFMD NEEQVGYQHV DSFGLTNWAA LDRLVASQLN 300 GHETMTYTQL GNCFSTNHHD YHDHELQLPS TLRSSTSSNL SSKLYHATSE IELWGTFAPH 360 SSSLSSSDAL CQVSNALL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MTENVSITVN GQSQVPPGFR FHPTEEELLQ YYLKKKVSSQ RIDLDVIRDV DLNKLEPWDV  60
QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATTAGFWK ATGRDKVISS NYRRIGMRKT  120
LVFYKGRAPH GHKSDWIMHE YRLDDNTSNI TNVIDVVEAA KEEGWVVCRI FKKKHLHKTL  180
DSPILGVTTS SITTDITSTH QHFDNSCDDN DEGALEHILE CMGSRTCKEE INEANNSLIM  240
NHIDGFHNDD RFLKLPSLES PKSSAELFMD NEEQVGYQHV DSFGLTNWAA LDRLVASQLN  300
GHETMTYTQL GNCFSTNHHD YHDHELQLPS TLRSSTSSNL SSKLYHATSE IELWGTFAPH  360
SSSLSSSDAL CQVSNALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-115	NAC family protein