PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G06826
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Nin-like
Protein Properties Length: 356aa    MW: 41018.1 Da    PI: 4.6255
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G06826genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.77.2e-26247295452
       RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   ++le+++kyF+lpi++AAkeL+v+lT+LKr+CR+++I+RWPhRki+sl
  Ro07_G06826 247 GLELEEIKKYFDLPITKAAKELKVGLTLLKRRCRELNIMRWPHRKIRSL 295
                  5899*******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MEYSTQQLVL PKIEENPLAF SYLEYYNRDP FQNSTTSLFE APQLENFPNE FNSLALPILE  60
DYNQNPHMGF QGFEDLCNWD FTLDSTTFSS PCHYDYHVLD EKPLPTMVDS FDYSNNNVPS  120
DLGHDEVSLM IESSGFSSSQ CDSVVFDEKT LTTMDYFDYS NNVRSNLGQH EVPMMIESSG  180
FPSSHCDSVM LDEMPISTMV ESFDNSNNVP SVLGHHEVSM VIESTTFSSG TSSTRRYKTQ  240
MEISSGGLEL EEIKKYFDLP ITKAAKELKV GLTLLKRRCR ELNIMRWPHR KIRSLNSLIE  300
TLEGMGLKTE VKMLEENKRL LEQLPNMELT QRTKKLRQSI FKANYKKKIT ENHENE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.13e-40Nin-like family protein