PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G53040.1 | ||||||||
Common Name | GRD, MNB8.10, RKD4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 256aa MW: 29896.1 Da PI: 7.2723 | ||||||||
Description | RWP-RK domain-containing protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83 | 2.8e-26 | 145 | 195 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl AT5G53040.1 145 QDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 195 6799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.791 | 130 | 216 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-21 | 148 | 195 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000200 | anatomy | micropylar endosperm | ||||
PO:0000201 | anatomy | chalazal cyst | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0020090 | anatomy | embryo sac central cell | ||||
PO:0020094 | anatomy | plant egg cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSSSKHSSVF NYSALFLSLF LQQMDQNSLH HLDSPKIENE YEPDSLYDML DKLPPLDSLL 60 DMEDLKPNAG LHFQFHYNSF EDFFENIEVD NTIPSDIHLL TQEPYFSSDS SSSSPLAIQN 120 DGLISNVKVE KVTVKKKRNL KKKRQDKLEM SEIKQFFDRP IMKAAKELNV GLTVLKKRCR 180 ELGIYRWPHR KLKSLNSLIK NLKNVGMEEE VKNLEEHRFL IEQEPDAELS DGTKKLRQAC 240 FKANYKRRKS LGDDYY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18423463 | 0.0 | ||||
Expression Atlas | AT5G53040 | - | ||||
AtGenExpress | AT5G53040 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G53040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G53040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB018116 | 0.0 | AB018116.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNB8. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200116.1 | 0.0 | RWP-RK domain-containing protein | ||||
Swissprot | Q9LVU8 | 0.0 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A178UBS5 | 0.0 | A0A178UBS5_ARATH; RKD4 | ||||
STRING | AT5G53040.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 | Representative plant | OGRP567 | 17 | 77 |
Link Out ? help Back to Top | |
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Phytozome | AT5G53040.1 |
Entrez Gene | 835383 |
iHOP | AT5G53040 |
wikigenes | AT5G53040 |