PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G06800
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 357aa    MW: 40021.5 Da    PI: 4.4309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G06800genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-20123172255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp   gkr r +lg+f+taeeAa  +++a+ kl+g
  Ro07_G06800 123 KFRGVRQRP-WGKWAAEIRDP---GKRVRLWLGTFDTAEEAAMVYDNAAIKLRG 172
                  89*******.**********9...557*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MEMESSFLCP IKYTQHRTTT QKVTKPSRKT EPGTSVSPKI VRISMTDHDA TDSSSDEEEP  60
EFYFGRRRVK QYINEISIET DLRTSPVITN NGRKRPAIET RPVTKRPAPK KPSCPPANGG  120
SRKFRGVRQR PWGKWAAEIR DPGKRVRLWL GTFDTAEEAA MVYDNAAIKL RGPDAQTNFS  180
PPQKQDAESV DESIVDEAEV GIEPETTPNV SVSGYDSGEE SHHLSSPTSV LRFRTHPTEE  240
AEPPLKEKPV AVVQECEKEQ NSSVIPIPMD SEEEEEEEDS FRFPTPESPI FETSTLLFDS  300
PFFDDGVVPG PLLFDDFGDL FRMDTLDSSF SQMTSAMMCQ GDDCFQDIFG SDPLVVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-65ERF family protein