PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G04780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 27520.2 Da PI: 8.5794 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.4 | 9.2e-14 | 16 | 96 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+++ + +Li+a ++ +l+rg+l++++W+ev++++ r+ g ++ qCk++++ l+k+yk +k st+ ++d l Ro07_G04780 16 CWSDDATSLLITAWGDRYLQLNRGNLRQKDWKEVADAVnsRQNGGVKTDGQCKNRIDTLKKKYKLEKSKPFP------STWIFYDTL 96 7*************************************99889999******************98865543......466666666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MDRPTRPYAP GGREDCWSDD ATSLLITAWG DRYLQLNRGN LRQKDWKEVA DAVNSRQNGG 60 VKTDGQCKNR IDTLKKKYKL EKSKPFPSTW IFYDTLDSLI GISPNAAVSS KSTKPLTLAL 120 TLKSGDPSPR PLGSTESDGD GDGDVEGGVG LSGGAACREL ARAILKFGEI YERMESCKQE 180 QMIELEKQRM AFTKELEVQR LNMFMDAQLE LEKIKRPKYS HSSVPALKGN SLVKFGAMRY 240 LQQEEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 2e-59 | Trihelix family protein |