PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04753
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 413aa    MW: 45970.5 Da    PI: 4.8703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04753genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18112162155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+k+++g
  Ro07_G04753 112 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTAVDAALAYDEAAKAMYG 162
                  56*****999.**********8...2.359***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MLGSFGRLIS NALEFWDRKR LIVGVTELLD LRGRMGAYDQ GSNGFSQPLG STRKRGRSKK  60
DRGSVEETLS RWKEYNKLLE SGIYNDKTRK VQAKGSKKGC MKGKGGPDNQ RCNYRGVRQR  120
TWGKWVAEIR EPNRGNRLWL GTFPTAVDAA LAYDEAAKAM YGATARLNLP NINNHIYTSS  180
CNETSHDMSS VTTPSGSSTV ATRGFCGSSI SNQSDHSEVC AEEESFNVNV KTEDGEGEST  240
SHNWPNAYTH HPSATNAMVN VEVKSELPTD QPGVQEQAHD WVCRDGFDGD YLKQFSIDEI  300
FDVDELFGPM DSKPLPDPRL QQDWSSDVGH PEFADMVPVE CDRPSNLSDQ LQYRDAKLLG  360
NVQHMDQMAS AADYGFDFLN REMQENNVGV DNQGYFNVDD FGFDFNGGAS DAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-34ERF family protein