PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04379
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 338aa    MW: 36995.1 Da    PI: 8.3009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04379genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30153211259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp ++++tY+ eHnh+
  Ro07_G04379 153 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPGMFIVTYTAEHNHP 211
                  79*************************998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MEDDWDLTAV VRGCSTATTT TTTKTSTTTT FISDHHHHFH SSPLLSSFGQ QGFAANGQTF  60
CVLPLPDPIK PRSAIEELHD LYKPFFPKSH NPSLLSPTPQ ITLPNFSSPQ PLHRHQNHQQ  120
QPKLSATNPT QRSKKRKNQL KKVCQVPAES LSSDIWAWRK YGQKPIKGSP YPRGYYRCSS  180
SKGCMARKQV ERNRSDPGMF IVTYTAEHNH PAPTHRNSLA GSTRHKPVSS PQSTSVTGGD  240
STKPATKGCS PSPATSASME EELVGARSTT TMEAKEEKQS PLIDEDETEY FGVCDTIVSD  300
DFFVGLDGLA GDYFSDHSPA RFGLPWGTSS AATAASSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-76WRKY family protein