PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28982

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 676aa MW: 75152.1 Da PI: 9.7043

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28982	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.5e-08	583	632	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Ro06_G28982 583 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 632 678999******************9776668************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MVPQRRVNYG FNGYQVPEVP RSSRSARGKG PIRKKLEGNQ IHAFEILASV AGKLLESENP 60 LPTNASCRKD PHYNFDATTE SKQQKAENLL KEDPCEWGSY DEEASVPVCG VQRHQQSYTL 120 NQFSHSQENF SFEMNATSKS NDHLGTDRFA KKLGTVDSSS SCGSYSSKVV SDCPLSGDFI 180 EEKAQVVLKR KLEAEPSKDT GIKDGKAHVL GSSEDLVKME LKPPELVSSE HDVKAPFLGD 240 CKSHGPFLCH YDNVKVVSRD DDENSMGYVQ PCTMRKEFEN TPEGGDWEIK NLSESKHWRI 300 APDMKVGGYS RTDGKIKQVY RNGRACYAHQ RSQKIYPFKK RRFFNRRPFT TPDRGCNCES 360 MFSPSNKRED GGNCNAAIGP SSSTTGRQPL KSNDCKVKLS IKSFKVPELF IEIPATATVG 420 SLKRTVMEAV TSILGDGLHV GILVQGKKVR DDSKTLLQTG ISRDDKLDNL GFTLEPKHAK 480 LTYSQCKDDP SFVSGRELTR HSASLVSRPG TSNVSLNPPV INLGGCVEKA FNTVPSLAST 540 SIDKTPTASQ ALVAVPPISA KALAVVPFHR KSGHPAYVQR RMRRPFSVSE VEALVQAVEK 600 LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH 660 AYWSQRQAKQ QLKAAI

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MVPQRRVNYG FNGYQVPEVP RSSRSARGKG PIRKKLEGNQ IHAFEILASV AGKLLESENP  60
LPTNASCRKD PHYNFDATTE SKQQKAENLL KEDPCEWGSY DEEASVPVCG VQRHQQSYTL  120
NQFSHSQENF SFEMNATSKS NDHLGTDRFA KKLGTVDSSS SCGSYSSKVV SDCPLSGDFI  180
EEKAQVVLKR KLEAEPSKDT GIKDGKAHVL GSSEDLVKME LKPPELVSSE HDVKAPFLGD  240
CKSHGPFLCH YDNVKVVSRD DDENSMGYVQ PCTMRKEFEN TPEGGDWEIK NLSESKHWRI  300
APDMKVGGYS RTDGKIKQVY RNGRACYAHQ RSQKIYPFKK RRFFNRRPFT TPDRGCNCES  360
MFSPSNKRED GGNCNAAIGP SSSTTGRQPL KSNDCKVKLS IKSFKVPELF IEIPATATVG  420
SLKRTVMEAV TSILGDGLHV GILVQGKKVR DDSKTLLQTG ISRDDKLDNL GFTLEPKHAK  480
LTYSQCKDDP SFVSGRELTR HSASLVSRPG TSNVSLNPPV INLGGCVEKA FNTVPSLAST  540
SIDKTPTASQ ALVAVPPISA KALAVVPFHR KSGHPAYVQR RMRRPFSVSE VEALVQAVEK  600
LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH  660
AYWSQRQAKQ QLKAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-108	MYB_related family protein