PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G07540.1 | ||||||||
Common Name | F22G5.8, TRFL2, TRP5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 630aa MW: 70185.9 Da PI: 9.8501 | ||||||||
Description | TRF-like 2 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 528 | 577 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ AT1G07540.1 528 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 577 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.864 | 523 | 582 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-7 | 527 | 580 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-10 | 528 | 578 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.13E-16 | 529 | 579 | No hit | No description |
SuperFamily | SSF46689 | 2.36E-15 | 529 | 610 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS 60 SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN NNAERSFFVS EILQKSHEMQ 120 SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL 180 NFEAKLSRNV VGKDEKHIGS GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR 240 STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK 300 KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS 360 FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL VHGKKVRDDS KMLLQTGLSL 420 DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL 480 DSKPSAPNRG KTIYSRALIP VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV 540 QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR 600 VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-57 | 515 | 617 | 4 | 106 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145335226 | 0.0 | ||||
Genevisible | 261061_at | 0.0 | ||||
Expression Atlas | AT1G07540 | - | ||||
AtGenExpress | AT1G07540 | - | ||||
ATTED-II | AT1G07540 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Arabidopsis thaliana telomere-binding protein, putative (At1g07540) | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G07540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G07540 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy. {ECO:0000269|PubMed:15364931}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G07540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519535 | 0.0 | AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318943.1 | 0.0 | TRF-like 2 | ||||
Swissprot | Q6R0E3 | 0.0 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A178WMD3 | 0.0 | A0A178WMD3_ARATH; Uncharacterized protein | ||||
STRING | AT1G07540.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3240 | 25 | 39 | Representative plant | OGRP1391 | 12 | 25 |
Link Out ? help Back to Top | |
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Phytozome | AT1G07540.1 |
Entrez Gene | 837268 |
iHOP | AT1G07540 |
wikigenes | AT1G07540 |
Publications ? help Back to Top | |||
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