PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G27871
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 302aa    MW: 34008.9 Da    PI: 6.1131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G27871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.16.1e-104491255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a+ kl++
  Ro06_G27871 44 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEHEAAMAYDSAAIKLRK 91
                 789996.566899****999......44**********99*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MYTSAKRKNN VVAVLGETSD SNDTNFELHA NKRLRHDNDV SYAKFKGVVP QQNGHWGAQI  60
YANHQRIWLG TFKSEHEAAM AYDSAAIKLR KGNDSQRNFP WTNLTIQEPD FQNHITTEEV  120
IKMIRDGSYS SKLFGAFVRS QTQSQSQEIG KGTPNQIRVH GNGKILCGPL FKKELTPSDV  180
GKLNRLVIPK KYAVKYFPCI CENVEENGVD DVELVFYDKE NNLKSNYVIT FYTCESAELI  240
RDENGEATTT FSLIDVTHSE GESNKCLVEE EGKLELNLGG NSSYKLQEGE CKYGEENKAS  300
IG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-67RAV family protein