PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G51120.1
Common NameF23H24.5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family RAV
Protein Properties Length: 352aa    MW: 40307.5 Da    PI: 7.2663
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G51120.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.4e-104592154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 +++kGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+
  AT1G51120.1 45 TKFKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFKSAHEAAAAYDSASIKLR 92
                 69****9888.8******9993.....4*********************99997 PP
2B390.71.1e-28178274185
                  EEEE-..-HHHHTT-EE--HHH.HTT............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+ltpsdv+k++rlv+pkk+a ++                    e+++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF+
  AT1G51120.1 178 FQKELTPSDVGKLNRLVIPKKYAVKYmpfisddqsekeT---SegvEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFY 272
                  99*****************************98765541...0455899************************************************9 PP

                  E- CS
           B3  84 ld 85 
                    
  AT1G51120.1 273 TC 274
                  43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.79E-2445105No hitNo description
SMARTSM003804.2E-1646109IPR001471AP2/ERF domain
PROSITE profilePS5103216.92446103IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1346105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-1646103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.7E-32173273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-27176274IPR015300DNA-binding pseudobarrel domain
CDDcd100175.61E-26177272No hitNo description
SMARTSM010192.2E-22178286IPR003340B3 DNA binding domain
PfamPF023624.7E-26178275IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435178297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA  60
QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR NFPWSDFTLH EPDFQECYTT  120
EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK  180
ELTPSDVGKL NRLVIPKKYA VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC  240
YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG  300
NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2517727113100DNA-binding protein RAV1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184033670.0
Genevisible257581_s_at4e-82
Expression AtlasAT1G51120-
AtGenExpressAT1G51120-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G51120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G51120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798280.0AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence.
GenBankAY5608830.0AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175524.10.0AP2/B3 transcription factor family protein
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A178WMW50.0A0A178WMW5_ARATH; Uncharacterized protein
STRINGAT1G51120.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Representative plantOGRP10227710
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Fizames C, et al.
    The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence.
    Plant Physiol., 2004. 134(1): p. 67-80
    [PMID:14730065]
  3. Hu YX,Wang YX,Liu XF,Li JY
    Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development.
    Cell Res., 2004. 14(1): p. 8-15
    [PMID:15040885]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  6. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  7. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]