PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G27385
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 197aa    MW: 21766.3 Da    PI: 8.5083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G27385genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19555155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 ++++GVr+++ +g+Wv+eIr+p        +r++lg+f++aeeAa+a+++a+  + g
  Ro06_G27385  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFDSAEEAARAYDEAAILMSG 55
                 59*******9.**********8.....334*********************987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDSAE EAARAYDEAA ILMSGRNAKT  60
NFPVTTNEIA AANNKDQNNN SSKSSSTTSS LSAILSAKLR KCCKSPSPSL TCLRLDTENS  120
HIGVWQKRAG PRSDSNWLMM VELGQKSGLQ AEKAESTSGA PEVSDGHETG GLDGGDDRLH  180
EEERIALQMI EELLNRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.14e-69ERF family protein