PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G26515

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 488aa MW: 52786.1 Da PI: 6.6107

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G26515	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.7	1.1e-27	192	246	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ Ro06_G26515 192 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 246 5689***************.******************************86 PP
2	Myb_DNA-binding	39.3	1.5e-12	195	244	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg +t+ ++ s++qky+ Ro06_G26515 195 VDWTPELHRRFVQAVEQLGVDkaVPSRILELMGiDCLTRHNIASHLQKYR 244 57******************************889**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MLILSPLREQ HKDENRGGDP MESFSIGGAN VVDFSEFSGG NLLDSIDFDD LFLGIDSEMD 60 VLPDLEMDSE MLAEFSVSGG EESDLNTSTL SVEKWEEADN KANTNTSTVD KQDDYQKVDS 120 SGSGTTEFKN SSSENSTQGG GGGGGGEEIV SKRDESPGGA VNTSSSPKQS TDKARKSSSS 180 SAQSKTSHGK RKVKVDWTPE LHRRFVQAVE QLGVDKAVPS RILELMGIDC LTRHNIASHL 240 QKYRSHRKHL LAREAEAASW TQRRQMYGSA AAAAGGGGVS GKRPSSEIGP WLAPPTMGFP 300 PPMTPMHQHH HGHHHQFRPL HVWGHPTVDQ SMMHMWPPKH LAPFPSPQPP PSWPPAPPPP 360 PDPSYWHHHH QRAPNPVLTP GTPCFPRQMA MTPHTPTPRF PAPVPVPGIP PHHAMYKLDP 420 GAIGVPGQSG PQPLVDFQPS KESIDAAIGD ALSKPWLPLP LGLKPPSTDS VMGELQRQGI 480 PKVPPSCA

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MLILSPLREQ HKDENRGGDP MESFSIGGAN VVDFSEFSGG NLLDSIDFDD LFLGIDSEMD  60
VLPDLEMDSE MLAEFSVSGG EESDLNTSTL SVEKWEEADN KANTNTSTVD KQDDYQKVDS  120
SGSGTTEFKN SSSENSTQGG GGGGGGEEIV SKRDESPGGA VNTSSSPKQS TDKARKSSSS  180
SAQSKTSHGK RKVKVDWTPE LHRRFVQAVE QLGVDKAVPS RILELMGIDC LTRHNIASHL  240
QKYRSHRKHL LAREAEAASW TQRRQMYGSA AAAAGGGGVS GKRPSSEIGP WLAPPTMGFP  300
PPMTPMHQHH HGHHHQFRPL HVWGHPTVDQ SMMHMWPPKH LAPFPSPQPP PSWPPAPPPP  360
PDPSYWHHHH QRAPNPVLTP GTPCFPRQMA MTPHTPTPRF PAPVPVPGIP PHHAMYKLDP  420
GAIGVPGQSG PQPLVDFQPS KESIDAAIGD ALSKPWLPLP LGLKPPSTDS VMGELQRQGI  480
PKVPPSCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	7e-69	G2-like family protein