PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G25997

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 368aa MW: 39927 Da PI: 10.4209

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G25997	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.5e-15	66	153	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k + + + s++p+fd+l+ Ro06_G25997 66 CWSESATGVLIEAWGERYLELSRGNLKQKHWKEVADIVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMVAG--GGPSKWPFFDKLD 153 7***********************************85444455566778***************9997..67779****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEEDDEIHSP ASAGSGSPAS PRTNGRITVT VAVPSQITAA APQSGQNTLT LALPSQVRSS 60 GGREDCWSES ATGVLIEAWG ERYLELSRGN LKQKHWKEVA DIVSSREDYG KTPKTDIQCK 120 NRIDTVKKKY KLEKSKMVAG GGPSKWPFFD KLDHLIGATA KVAPGSGGGS VPPGFLPKNH 180 KIPMGMPVGV RGGGGGGGQF VPKHQQLLHK TNVKKRGPVE WDSDSSREVS PVSADSFPPP 240 VFEPKRPRMA GREANASSGR GVPGGVGKEI RGGDGGREKK GGWGNSMREL TLAMLRFGEA 300 YEHAETAKLQ QVVEMEKQRM KFAKELELQR MQFFMKTQLE ISQLKHGRRN GNASNHHRSN 360 NNNNSDSN

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEEDDEIHSP ASAGSGSPAS PRTNGRITVT VAVPSQITAA APQSGQNTLT LALPSQVRSS  60
GGREDCWSES ATGVLIEAWG ERYLELSRGN LKQKHWKEVA DIVSSREDYG KTPKTDIQCK  120
NRIDTVKKKY KLEKSKMVAG GGPSKWPFFD KLDHLIGATA KVAPGSGGGS VPPGFLPKNH  180
KIPMGMPVGV RGGGGGGGQF VPKHQQLLHK TNVKKRGPVE WDSDSSREVS PVSADSFPPP  240
VFEPKRPRMA GREANASSGR GVPGGVGKEI RGGDGGREKK GGWGNSMREL TLAMLRFGEA  300
YEHAETAKLQ QVVEMEKQRM KFAKELELQR MQFFMKTQLE ISQLKHGRRN GNASNHHRSN  360
NNNNSDSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	7e-79	Trihelix family protein