PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G25759

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 293aa MW: 31947.4 Da PI: 8.3021

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G25759	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	226	248	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H Ro06_G25759 226 ECPQCGAKFSSITTLVDHVQKvH 248 5******************9988 PP
2	zf-C2H2	14.5	0.0001	264	286	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F + L+ H + H Ro06_G25759 264 VCPKCSKGFCDAVALVEHVERdH 286 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MGTPEFPDLG KHCSVVECQQ IDFLPFTCDS CHKVFCLEHR SYIKHNCPKG DKQNVTVVIC 60 PLCAKGVHLI PDEDPNITWE RHVNTDCDPS NYEKATKKKK CPVPGCREIL TFSNTIKCRD 120 CMADHCLKHR FGPDHKCPGP KKPEAGFPFR GLLSRSRKEG SKPNHAPALS SSNWSTSFLS 180 AASSFRASAE AGVAKLSGEL SQKWQIAKDG VGQSSSSGSR NGQLEECPQC GAKFSSITTL 240 VDHVQKVHEK GGSRAGAKKL TVDVCPKCSK GFCDAVALVE HVERDHGGEL TPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-121	C2H2 family protein