PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25218
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 326aa    MW: 35799.3 Da    PI: 6.348
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.9e-17221255135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Ro06_G25218 221 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 255
                  99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MELPEFYIGG YFDGQLSPEK RQAEQKQAGG EQFTIDDLLD FSNEDALVTD GFFDSAVAGN  60
STDSSTVTAV DSCNSSVSGG EPQFSGNRSF GDSQFSGDLC VPYDDLAELE WLSNFVEDSF  120
SADKDLQALQ FLSTTTAKPQ TPETSSSSET PQNPPLFHHE TPLPGKARSK RSRAAPGDWT  180
TRLLHLITPN TNTNTDPKTT TSKKREGSSS NSGSDSSGRK CLHCASEKTP QWRTGPMGPK  240
TLCNACGVRY KSGRLVPEYR PAASPTFVSA RHSNSHRKVL ELRRQKEFQR SHQHQFLSPS  300
SIFGVSNGGD EFLIHHRGAN DFRQMM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-70GATA family protein