PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G23655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | HB-other | ||||||||
Protein Properties | Length: 169aa MW: 19227.3 Da PI: 9.3424 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26 | 1.5e-08 | 59 | 100 | 3 | 44 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rqV Ro06_G23655 59 KKRRLSFEQVKALEKNFEVENKLEPERKVRLAQDLGLQPRQV 100 45578889*********************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MKRLGSSDSL GALISICPTT TADEHSPRNN HVYSRDFQSM LDDMDEEGCV EESGHIAEKK 60 RRLSFEQVKA LEKNFEVENK LEPERKVRLA QDLGLQPRQV VEKTTQRKKR GAMFSFIAEG 120 IVIIVGPSQG VKKVTKIVQD CIVHNVHPVC WVTTFKRVLP MKRLEALRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-36 | HD-ZIP family protein |