PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20980

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CPP

Protein Properties

Length: 876aa MW: 96144.5 Da PI: 6.9756

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20980	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.5	1.7e-15	538	576	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC+kskClk+YCeCfaag++C ++C Ce+C Nk e Ro06_G20980 538 CKRCNCRKSKCLKLYCECFAAGVFCLDSCACENCYNKPE 576 79**********************************975 PP
2	TCR	46.9	5.6e-15	624	661	1	38
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkkskClkkYCeC++a++ Cs C+C++C+N Ro06_G20980 624 RHKRGCNCKKSKCLKKYCECYQANVGCSGACRCDGCQN 661 589**********************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence
MDRSPETNRV AATSSSPVSS SPPVQESPFS NFLSNLTPIN TVKSESYTQL GTFLPTPPVV 60 FTSPHIDLQR ENSFLERCEN LLVYRNDIVE AGSNVDVYKE CNTNIVQNPS FEKEVQLCSA 120 SGCIDEYLAD PKVDCTNSAG LHLKPANDVS QLLHSGITVS KESNTEVHDV IDGSTKNVAL 180 TSSNQAEENL PSCELTESTT NQSSVKNSEE FPRFSSVKCK ESAINVHLVS QAQSQGHNTS 240 KSAGYQYGEH NATVQLYEDL NERKRKVLEG SVKEVSQHHR GIRRHLQFET AVAHKSTTCG 300 NNESLWSLTH DTANLRSPSN QTNLRTLASS HFDNKASSGP QAVSCDTSQL SFCPHDSVRS 360 VLTGGNSSTS APIRSGIGLH LNSIPKSTSM SSDVFLSRKS TGYLSTTDQM LDHDNRNNIK 420 KDSSSSFISA VPGENYSCVG DGQQESQSAA DTSSFTFYST DGMSYLPCDS LHHILVDQQP 480 VSCEEGDASQ DANKVEESNQ LSQTRKRQVH YYLWSMIPHF SFYMAPITIA CAEISDGCKR 540 CNCRKSKCLK LYCECFAAGV FCLDSCACEN CYNKPEFEDT VFDTRQQIES RNPLAFAPKV 600 VKHEIDSLPN ITEEADWMTP SSARHKRGCN CKKSKCLKKY CECYQANVGC SGACRCDGCQ 660 NPCGTKADQE YNRAEKWETH PAEKLDTIKG GNDCIKAANI NPYSPSWEGL SAISNLTPLS 720 HPCSSTKVSS ASSSLRNTKI SQSQLQSSRL QSSGTGRFKR GRSPVIFTPQ VYESKGPYQL 780 SSDDASCERT DDDVPEILKE ASYTTKVVKA SSPNQKRVSP PQSRAEKLRS SSPRGLRSGR 840 KFILQAVPSF PPLSPYTDSK DAISDTRNGR KGTNNN

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence

MDRSPETNRV AATSSSPVSS SPPVQESPFS NFLSNLTPIN TVKSESYTQL GTFLPTPPVV  60
FTSPHIDLQR ENSFLERCEN LLVYRNDIVE AGSNVDVYKE CNTNIVQNPS FEKEVQLCSA  120
SGCIDEYLAD PKVDCTNSAG LHLKPANDVS QLLHSGITVS KESNTEVHDV IDGSTKNVAL  180
TSSNQAEENL PSCELTESTT NQSSVKNSEE FPRFSSVKCK ESAINVHLVS QAQSQGHNTS  240
KSAGYQYGEH NATVQLYEDL NERKRKVLEG SVKEVSQHHR GIRRHLQFET AVAHKSTTCG  300
NNESLWSLTH DTANLRSPSN QTNLRTLASS HFDNKASSGP QAVSCDTSQL SFCPHDSVRS  360
VLTGGNSSTS APIRSGIGLH LNSIPKSTSM SSDVFLSRKS TGYLSTTDQM LDHDNRNNIK  420
KDSSSSFISA VPGENYSCVG DGQQESQSAA DTSSFTFYST DGMSYLPCDS LHHILVDQQP  480
VSCEEGDASQ DANKVEESNQ LSQTRKRQVH YYLWSMIPHF SFYMAPITIA CAEISDGCKR  540
CNCRKSKCLK LYCECFAAGV FCLDSCACEN CYNKPEFEDT VFDTRQQIES RNPLAFAPKV  600
VKHEIDSLPN ITEEADWMTP SSARHKRGCN CKKSKCLKKY CECYQANVGC SGACRCDGCQ  660
NPCGTKADQE YNRAEKWETH PAEKLDTIKG GNDCIKAANI NPYSPSWEGL SAISNLTPLS  720
HPCSSTKVSS ASSSLRNTKI SQSQLQSSRL QSSGTGRFKR GRSPVIFTPQ VYESKGPYQL  780
SSDDASCERT DDDVPEILKE ASYTTKVVKA SSPNQKRVSP PQSRAEKLRS SSPRGLRSGR  840
KFILQAVPSF PPLSPYTDSK DAISDTRNGR KGTNNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	8e-60	CPP family protein