PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G20504
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 448aa    MW: 50694.4 Da    PI: 5.8614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G20504genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19205255256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Ro06_G20504 205 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 255
                  59******9.**********955...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    
MASAKKSDNG VDETRMERNQ DCEVDKGKEH DFFLERRQWK PVFDEASMSH RPLKKIRSPE  60
RCHPHRSNAS SPEFQIAPAP SSSNTSIPSS RIVFPFAFDG SPPQQQPIQL PHQFQTTGLQ  120
PIQLQPTTHL VEQQQQNQQQ MISFGSQQQE MISWQQQQQQ QMLQYWSNAL NLSPRGRMMM  180
MMNRFGGANS NGVRPLAMPI STSKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED  240
AALAYDREAF KLRGENARLN FPELFLNKDR DNDNAAPVSK DQSPTATTSV PTDQVSKPSS  300
RNQSKQLKNL NLELQVPISD METMAPPPVP DPHLQEDNTR DNDLAKQVEV DNNGGGGGII  360
SDAPTQNELV WGGMTEAWLN AIPQGWGPGS PVWDDLELDM TSNNLVLQSN DPLHFTTNYP  420
NQQLQQDNSC SSGSSSCPMK PFFWNDQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-44ERF family protein