PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro06_G19547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26047.2 Da PI: 9.5688 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.7 | 3.7e-20 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G + Wk+Ia + g++R++k+c++rw++yl Ro06_G19547 30 KGAWTAEEDQKLAEVIAIHGAKKWKSIATKAGLNRCGKSCRLRWLNYL 77 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.9e-16 | 83 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Ro06_G19547 83 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 128 78999*****************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MAPKKQESVK RAVMKPLEAV MKNSKREVNK GAWTAEEDQK LAEVIAIHGA KKWKSIATKA 60 GLNRCGKSCR LRWLNYLRPN IKRGNISDQE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI 120 KNYWNSHLSK RINQKEKQRS TGGADDSTRR ISLVDQKPST QLSDQNKVHG EMKQDSSSEE 180 GTATITNASN KEGDDHEDYS NSDIDIDDFF DFSNEGPFNL EWVNKFLY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27920.1 | 3e-54 | MYB family protein |