PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G18315

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 534aa MW: 60114.9 Da PI: 7.4468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G18315	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgks+ + L H+r+H Ro06_G18315 9 YVCKLCGKSCVSGKVLGGHMRSH 31 9********************99 PP
2	zf-C2H2	17.6	1.1e-05	83	104	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk+F +ks H+r H Ro06_G18315 83 VCKVCGKRFDSKSAVFGHMRHH 104 7*******************99 PP
3	zf-C2H2	15.7	4.3e-05	115	135	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C dCgk F + L +H r+H Ro06_G18315 115 CRDCGKGFESLKALSVHRRVH 135 *******************99 PP
4	zf-C2H2	11.1	0.0012	377	399	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+++F + L H+r+H Ro06_G18315 377 HKCRICKRVFGTYQALGGHQRVH 399 79*******************99 PP
5	zf-C2H2	10.7	0.0017	451	473	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F++ L H r+H Ro06_G18315 451 HTCGICLKVFPSGQALGGHKRSH 473 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MEKQKGKGYV CKLCGKSCVS GKVLGGHMRS HAFKNSVKSE RKHKNSNVDF QDDADGNVGY 60 GLRLNPKKSW KFSGKDEKEE EIVCKVCGKR FDSKSAVFGH MRHHSVKQRN EAQWCRDCGK 120 GFESLKALSV HRRVHTKRLR GFDESENIST QKLCIESLGL VRRKRSARLR YRIATPSSPF 180 SSLNESKFSY GYGVDIEEAA FCLMMISRGL GDWGQISSVA ESSNNNSFSF EVVSPSQKKR 240 VRDDEGEFFV CDDDSGSSQF KRAKVDMLAD YVLDCENGSN VKEVSEYGEI NSGFVSDEMP 300 KSGFMFYGIE IEKEACGEME LDVEISEEVE MGPSVLGSMK FGLNKKAMLK ACDSVNKVVC 360 ANESETFIAD SEKKREHKCR ICKRVFGTYQ ALGGHQRVHK RSYKSSMLKI EDDEDKTQID 420 TINADKLEGI DNSVDQEMER VTMAGSERKG HTCGICLKVF PSGQALGGHK RSHFVKDSEI 480 GTDQTRALKQ QISDICDAFE LIHPVKLQEE NDGVEFNPWW VENEQKHELL VGKL

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MEKQKGKGYV CKLCGKSCVS GKVLGGHMRS HAFKNSVKSE RKHKNSNVDF QDDADGNVGY  60
GLRLNPKKSW KFSGKDEKEE EIVCKVCGKR FDSKSAVFGH MRHHSVKQRN EAQWCRDCGK  120
GFESLKALSV HRRVHTKRLR GFDESENIST QKLCIESLGL VRRKRSARLR YRIATPSSPF  180
SSLNESKFSY GYGVDIEEAA FCLMMISRGL GDWGQISSVA ESSNNNSFSF EVVSPSQKKR  240
VRDDEGEFFV CDDDSGSSQF KRAKVDMLAD YVLDCENGSN VKEVSEYGEI NSGFVSDEMP  300
KSGFMFYGIE IEKEACGEME LDVEISEEVE MGPSVLGSMK FGLNKKAMLK ACDSVNKVVC  360
ANESETFIAD SEKKREHKCR ICKRVFGTYQ ALGGHQRVHK RSYKSSMLKI EDDEDKTQID  420
TINADKLEGI DNSVDQEMER VTMAGSERKG HTCGICLKVF PSGQALGGHK RSHFVKDSEI  480
GTDQTRALKQ QISDICDAFE LIHPVKLQEE NDGVEFNPWW VENEQKHELL VGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	1e-16	C2H2 family protein