PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G17327
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family SAP
Protein Properties Length: 456aa    MW: 50002.5 Da    PI: 8.1755
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G17327genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP704.31.3e-21414551455
          SAP   1 mssssssssseseegseggeggdass......gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdll 92 
                  msssss s s++++g+++g+++ ++       g++egpsssr+ra+ evwpePfleala+qvai asr++Grlaaa alanvfqvcstwravsrs  l
  Ro06_G17327   1 MSSSSSPSTSQNDSGNAAGTSTVRQRrgggsgGNFEGPSSSRRRAVSEVWPEPFLEALAAQVAIAASRNIGRLAAAAALANVFQVCSTWRAVSRSRTL 98 
                  899999999988888776655433334455569***************************************************************** PP

          SAP  93 wqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqh 190
                  w  ltrriW rt+ll++tW++ey+y+hrtarnfrt+r+sy+ l fdp+dvd+   +d l+Crclalsd yla+GfadG+vrlfdl tr hvst++p++
  Ro06_G17327  99 WLDLTRRIWGRTHLLQATWHDEYVYWHRTARNFRTGRSSYTRLYFDPSDVDD---PDGLTCRCLALSDDYLACGFADGTVRLFDLGTRHHVSTYRPHQ 193
                  ************************************************9998...689**************************************** PP

          SAP 191 rdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltd 288
                  rdr+Grf ra++Givis +rl+fatldGdihva++ g   + +rra+lGdvv dGal+df+G+grWwvGlyaGvpGra +iWd++teel fvG  ltd
  Ro06_G17327 194 RDRIGRFPRAITGIVISGTRLTFATLDGDIHVAIVPG--PSITRRAHLGDVVRDGALLDFTGCGRWWVGLYAGVPGRAIRIWDSNTEELLFVGWDLTD 289
                  ***********************************99..669******************************************************** PP

          SAP 289 PeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.a 385
                  PeavmGWhmltelte+vGrvr t++ tavaCt  rl+vfdl n  v l++e  rrG+iv+s+++s+ a v+v srG a+vrrv++l+e+crf v+g  
  Ro06_G17327 290 PEAVMGWHMLTELTEFVGRVRATSHGTAVACTGARLLVFDLGNGAV-LADERYRRGIIVTSVNVSDAACVIVGSRGLARVRRVDTLQEICRFMVSGaG 386
                  *****************************************99765.6679999******************************************99 PP

          SAP 386 qrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                  q g +gC+nggyal+++ggv+ vWe+e+ e  lys+rervg+vna+v d+rhvav+ssd+t+hl+dfgaq
  Ro06_G17327 387 QMGAMGCMNGGYALMCTGGVITVWEVERGE-RLYSFRERVGQVNAFVCDERHVAVCSSDTTLHLWDFGAQ 455
                  9***************************77.9************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    
MSSSSSPSTS QNDSGNAAGT STVRQRRGGG SGGNFEGPSS SRRRAVSEVW PEPFLEALAA  60
QVAIAASRNI GRLAAAAALA NVFQVCSTWR AVSRSRTLWL DLTRRIWGRT HLLQATWHDE  120
YVYWHRTARN FRTGRSSYTR LYFDPSDVDD PDGLTCRCLA LSDDYLACGF ADGTVRLFDL  180
GTRHHVSTYR PHQRDRIGRF PRAITGIVIS GTRLTFATLD GDIHVAIVPG PSITRRAHLG  240
DVVRDGALLD FTGCGRWWVG LYAGVPGRAI RIWDSNTEEL LFVGWDLTDP EAVMGWHMLT  300
ELTEFVGRVR ATSHGTAVAC TGARLLVFDL GNGAVLADER YRRGIIVTSV NVSDAACVIV  360
GSRGLARVRR VDTLQEICRF MVSGAGQMGA MGCMNGGYAL MCTGGVITVW EVERGERLYS  420
FRERVGQVNA FVCDERHVAV CSSDTTLHLW DFGAQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-174SAP family protein