PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G16962
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 285aa    MW: 32245 Da    PI: 6.6337
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G16962genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.12.3e-4251432128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                  ppGfrF Pt+eelv++yL +k++g++      ++++i+ +diy+++PwdLp+     ++++ ++w+fF++r++++a+g r++r t++gyWkatg+   
  Ro06_G16962   5 PPGFRFYPTEEELVSFYLPNKLDGSRedlnRVMDRIIPVLDIYEFNPWDLPRnsgeICHGDPEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPSY 102
                  9************************966643334479999**********9535643344667*********************************** PP

          NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  v+s+    +++++glk+t+vfy+grap+g kt+W m+eyr+
  Ro06_G16962 103 VFSSgsntNHRAIGLKRTMVFYTGRAPNGIKTEWKMNEYRA 143
                  ***977666667***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MEDFPPGFRF YPTEEELVSF YLPNKLDGSR EDLNRVMDRI IPVLDIYEFN PWDLPRNSGE  60
ICHGDPEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVFSSGSNT NHRAIGLKRT  120
MVFYTGRAPN GIKTEWKMNE YRAIEADHQL QAPSSSSNTA PMLRQEFSLC RVYKKTKCLR  180
AFDRRPSGAG DIIRKHTVKV HLPAAPQVGA DDQEASISHA RNIVPAPNTY NVEVERRSFS  240
SPESTSSGDH GQPSQSGQST GSLPMAVDNG ELWELVPLEQ LDWFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-74NAC family protein