PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G16671
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 321aa    MW: 35597.9 Da    PI: 8.7278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G16671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29167226159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  Ro06_G16671 167 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHP 226
                  58***************************99****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MDYSSAAYDT SLDLNTKPLR LFDDSPPIKK EVHSKILIDF GSQLSENEES GALVEELHRV  60
SAENKKLTEM LTVMGESYNA LRSQLLEYMS KNPEKELSPI SKKRKSESSN NNNTSVNNIL  120
NGINNGNSES SSSDGESCKK PREETIKAKI YRSYVRTEPS DTTSLVVKDG YQWRKYGQKV  180
TRDNPCPRAY FKCSFAPTCP VKKKVQRSVE DQSILVATYE GEHNHPHPSQ LEASPGSNRC  240
MTLGSVPCST SLGSSGPTIT LDLTKSKSNT SDTKSPKPRT ETPEVRKFLV EQMASSLTKD  300
PNFTKALAAA ISGRILQHNT Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-90WRKY family protein