PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13142

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 425aa MW: 47871.2 Da PI: 8.6741

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13142	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.7e-07	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Ro06_G13142 221 HYCQVCGKGFKRDANLRMHMRAH 243 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MNINQGATSN CFQSMYSMTD QDTISSFSLE PNSSSSGAVI TQDQNHSSSL LYSLSVLKEK 60 VHQAKSLVSM LITPDHHQSQ QQQPTESTTM GVVASMNNVI QEIIVTASSM MFTCQQMALV 120 APGNDTRTQP NFSISNDRSN IRDAAFYSTH DQTIDWLSTE NYNDCPTRDV ISRSHRQVEA 180 KELPPRVETN NGLKLQSLPQ KNSSYDIIEL EVADLLAKYT HYCQVCGKGF KRDANLRMHM 240 RAHGDEYKTS TALSNPLKNN NKNSVMNIHG SSNAECSMKL PRKYSCPQQG CRWNQKHAKF 300 QPLKSMICVK NHYKRSHCPK MYICKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR 360 KDKLMGHVAL FVGHTPVIIS SDLPLRHGKA ESQATGLMQL VARPFLSPSF GFFDWSVPLL 420 SNEDV

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MNINQGATSN CFQSMYSMTD QDTISSFSLE PNSSSSGAVI TQDQNHSSSL LYSLSVLKEK  60
VHQAKSLVSM LITPDHHQSQ QQQPTESTTM GVVASMNNVI QEIIVTASSM MFTCQQMALV  120
APGNDTRTQP NFSISNDRSN IRDAAFYSTH DQTIDWLSTE NYNDCPTRDV ISRSHRQVEA  180
KELPPRVETN NGLKLQSLPQ KNSSYDIIEL EVADLLAKYT HYCQVCGKGF KRDANLRMHM  240
RAHGDEYKTS TALSNPLKNN NKNSVMNIHG SSNAECSMKL PRKYSCPQQG CRWNQKHAKF  300
QPLKSMICVK NHYKRSHCPK MYICKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR  360
KDKLMGHVAL FVGHTPVIIS SDLPLRHGKA ESQATGLMQL VARPFLSPSF GFFDWSVPLL  420
SNEDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-102	C2H2 family protein