PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G12356
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 258aa    MW: 28058.2 Da    PI: 5.3765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G12356genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-1870120155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Ro06_G12356  70 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 120
                  68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MAAEPNNSEA ESTTSNSSLS SASSLCTAGL LQSTHPKTTQ KVDSKSEKQQ QKPLKRGRES  60
RDTNSSNKHP VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FSTPEMAARA HDVAALSIKG  120
NSAILNFPAL AELLPRPVSL KAPDIQAAAT KAAAMVHLDS ATATSSSSSS SSSSPSVVLS  180
RSESSESEEE LGEIVELPNI EGSFDSPESR SEFIPVNDSV DIGWLYDDPP LMGLDHNLIP  240
SINFEEDLVS WDIHHIMT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein