PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11576

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 466aa MW: 51824.8 Da PI: 7.0698

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11576	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	25.5	3.2e-08	127	152	1	31
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrf 31 s+y+GV++++++grW+++I+d ng k++ Ro06_G11576 127 SQYRGVTFYRRTGRWESHIWD---NG--KQV 152 78*******************...33..333 PP
2	AP2	43.3	9.4e-14	227	277	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g Ro06_G11576 227 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIKCHG 277 89******.7**...5...334336******99*********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MLDLNLGFLS SRARNSAPNE MESSVGSINS SNDDSSSTLN FLDQNDVAAP YDDAPDHYFD 60 GRTIQLFPPP AQSQPLRSST TKQWLGLSSG SATAPHRYCA PPPAEQRIAP LQDKVKKSRR 120 GPRSRSSQYR GVTFYRRTGR WESHIWDNGK QVGLTLRILQ LGENQEADYL ITIAYDRAAI 180 KFRGTEADIN FSVIDYDEDI KQMSHFTKEE FVHILRRQST GFARGSSKYR GVTLHKCGRW 240 EARMGQLLGK KYIYLGLFDS EIEAARAYDK AAIKCHGRDA VTNFDQSLYD GEIMSEANNA 300 DESLDLNLGI APPLASESPN DNINLRSFPF HLGCNDIPIH MRVRNENSVP ATMRAQLPHG 360 SMEASVEPPI MSSMNANFFP IHMERATEKS MDANSFPNWA WQMQGLNGGA TPVPLFSAAA 420 SSGFPSSTTP SSSAAAPPLH FPNTSFLQHH FSPSFTNNTP HFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MLDLNLGFLS SRARNSAPNE MESSVGSINS SNDDSSSTLN FLDQNDVAAP YDDAPDHYFD  60
GRTIQLFPPP AQSQPLRSST TKQWLGLSSG SATAPHRYCA PPPAEQRIAP LQDKVKKSRR  120
GPRSRSSQYR GVTFYRRTGR WESHIWDNGK QVGLTLRILQ LGENQEADYL ITIAYDRAAI  180
KFRGTEADIN FSVIDYDEDI KQMSHFTKEE FVHILRRQST GFARGSSKYR GVTLHKCGRW  240
EARMGQLLGK KYIYLGLFDS EIEAARAYDK AAIKCHGRDA VTNFDQSLYD GEIMSEANNA  300
DESLDLNLGI APPLASESPN DNINLRSFPF HLGCNDIPIH MRVRNENSVP ATMRAQLPHG  360
SMEASVEPPI MSSMNANFFP IHMERATEKS MDANSFPNWA WQMQGLNGGA TPVPLFSAAA  420
SSGFPSSTTP SSSAAAPPLH FPNTSFLQHH FSPSFTNNTP HFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-87	AP2 family protein