PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09217
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 451aa    MW: 49189.6 Da    PI: 8.4666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09217genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34.1e-115377327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 ++ C+++ rtG C++G++C+F+H+p
  Ro06_G09217 53 EPDCSYYIRTGLCRFGATCRFNHPP 77
                 789********************97 PP

2zf-CCCH32.21.8e-10112131827
                  GGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                  ++++tGtCk+G++CkF+H++
  Ro06_G09217 112 YYLKTGTCKFGATCKFHHPR 131
                  8*****************96 PP

3zf-CCCH31.23.7e-10155177527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C +++rtG+Ck+ ++CkF+H++
  Ro06_G09217 155 ECAYYLRTGQCKFASTCKFHHPQ 177
                  7********************97 PP

4zf-CCCH37.83.1e-12312338127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  Ro06_G09217 312 PGQPECQFYMKTGDCKFGAVCRFHHPR 338
                  5789*********************96 PP

5zf-CCCH40.16.1e-13358384127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  Ro06_G09217 358 PGEPLCIFYSRYGICKFGPSCKFDHPM 384
                  589**********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    
MDFDAGIPMS RTAAAAATPV TDAPSLTQDA MWQMNLRSSE TMEPGPYPER AGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIFVKLV VYYLKTGTCK  120
FGATCKFHHP RDKAGIAGRV TLNILGYPLR PNEIECAYYL RTGQCKFAST CKFHHPQPTN  180
MMVSLSGSPV YPTVQSPTTP GQQSYPGGVT NWSRASFIPS PRWQGPSSYA PLIVPQGVVS  240
VPGWSAYSGQ VGSISSSESQ QQTVGNSQVY GTSRQREPEN SGSQGAFSPY RSGSIPVGFY  300
ALQRENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE  360
PLCIFYSRYG ICKFGPSCKF DHPMGIFTYN HSASSSADGP ARRLLGSTSG TTSLNLSSEG  420
LVEAGSAKPR RLSLSEPRQL PSADENIDTE D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-180C3H family protein