PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G09217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 451aa MW: 49189.6 Da PI: 8.4666 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 4.1e-11 | 53 | 77 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p Ro06_G09217 53 EPDCSYYIRTGLCRFGATCRFNHPP 77 789********************97 PP | |||||||
2 | zf-CCCH | 32.2 | 1.8e-10 | 112 | 131 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Ro06_G09217 112 YYLKTGTCKFGATCKFHHPR 131 8*****************96 PP | |||||||
3 | zf-CCCH | 31.2 | 3.7e-10 | 155 | 177 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+ ++CkF+H++ Ro06_G09217 155 ECAYYLRTGQCKFASTCKFHHPQ 177 7********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 312 | 338 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Ro06_G09217 312 PGQPECQFYMKTGDCKFGAVCRFHHPR 338 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 6.1e-13 | 358 | 384 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Ro06_G09217 358 PGEPLCIFYSRYGICKFGPSCKFDHPM 384 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence |
MDFDAGIPMS RTAAAAATPV TDAPSLTQDA MWQMNLRSSE TMEPGPYPER AGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIFVKLV VYYLKTGTCK 120 FGATCKFHHP RDKAGIAGRV TLNILGYPLR PNEIECAYYL RTGQCKFAST CKFHHPQPTN 180 MMVSLSGSPV YPTVQSPTTP GQQSYPGGVT NWSRASFIPS PRWQGPSSYA PLIVPQGVVS 240 VPGWSAYSGQ VGSISSSESQ QQTVGNSQVY GTSRQREPEN SGSQGAFSPY RSGSIPVGFY 300 ALQRENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE 360 PLCIFYSRYG ICKFGPSCKF DHPMGIFTYN HSASSSADGP ARRLLGSTSG TTSLNLSSEG 420 LVEAGSAKPR RLSLSEPRQL PSADENIDTE D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-180 | C3H family protein |