PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09077
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 215aa    MW: 24408.3 Da    PI: 6.2482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09077genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-101563555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +E++RR++++  ++ L +llP++  ++++ ls  e   +A++YIksL+
  Ro06_G09077 15 RRVIEKNRRNHMKILYAHLNSLLPNQ--NSKEPLSLPEQIDEAINYIKSLE 63
                 5689*********************6..26666****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MDASLSSSST TKVERRVIEK NRRNHMKILY AHLNSLLPNQ NSKEPLSLPE QIDEAINYIK  60
SLEANVQKSK QKRDSLYFDR KRSYECCSSS SGSFETARSA PSAKSPQIQV HENGSTLEVV  120
LSTGLHNQFI FYDIIRILDQ EQTDVVHASF SASGDSILHV VRAEMGTSML NFGAARITEK  180
LKKIVNGSTS DEELQRDDDQ DFFWDFQILP QAWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-35bHLH family protein