PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08385

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 438aa MW: 48732.9 Da PI: 7.5367

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08385	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Ro06_G08385 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45	2.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Ro06_G08385 67 RGPFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPIS AEADQNDHSK EINQLSPTNY KSNEQQKASV GSNELNLVEA AVNSKQPENH 180 RYPVEVSSCS KVINNSNNTQ EFFIDRAACT SHEGSTTTNC RPSDFVGYFS FHHHHQSNFG 240 SSSDTMGLNA VNPNPTFSFL NQNSRSNSDP QMVSEYSTSM VTPATLLPSM SSSSLFGTRV 300 KPSISLPSDN SSTVSWDQSS AGYSNNGGFD NTAAAFSWGL LPEVPVKSDD VEEINKWSEY 360 FHSPFLMGAN TMQNINQSSP YNSTEIKPET QYCMTNNGSS STSAATTSWA QQANNLQASS 420 EMYTKDLQRL AVAFGQTL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPIS AEADQNDHSK EINQLSPTNY KSNEQQKASV GSNELNLVEA AVNSKQPENH  180
RYPVEVSSCS KVINNSNNTQ EFFIDRAACT SHEGSTTTNC RPSDFVGYFS FHHHHQSNFG  240
SSSDTMGLNA VNPNPTFSFL NQNSRSNSDP QMVSEYSTSM VTPATLLPSM SSSSLFGTRV  300
KPSISLPSDN SSTVSWDQSS AGYSNNGGFD NTAAAFSWGL LPEVPVKSDD VEEINKWSEY  360
FHSPFLMGAN TMQNINQSSP YNSTEIKPET QYCMTNNGSS STSAATTSWA QQANNLQASS  420
EMYTKDLQRL AVAFGQTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-100	MYB family protein