PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G07588

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 701aa MW: 76637.1 Da PI: 7.2686

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G07588	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	396	433	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Ro06_G07588 396 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 433 554459******************************88 PP
2	BELL	122.2	2.1e-39	260	331	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+s+l+eVd+rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi Ro06_G07588 260 ERQEIQMKKGKLISMLDEVDQRYRQYHRQMQMVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 331 79*********************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MATYFHGNSD IQSPDGGLQT LVLMNHGGYV QYSDTTQQQQ QSPSAATNQL VFLNSAAAAA 60 NSLAQGPTLP HAPPSHTQQF VGIPLPTVSS QDPSNSQSMQ PHHDMAALHA FMPRIQTQYA 120 LWNSIDPSAR DTPRAQQGLS LSLSSQQPGF GSFRGADREV TTAGEDIRVS SGSNSSASGV 180 TNGVSGMQSV LLSSKYLKAA QELLDEVVNV GNGIRTELPK KGNGNPGKNM AESSMAAAGD 240 GSVAGDQDSG KRALELSTAE RQEIQMKKGK LISMLDEVDQ RYRQYHRQMQ MVISSFEQAA 300 GIGSARTYTA LALQTISKQF RCLKDAITNQ IRAANKSLGE EDCGGGKIEG SRLKYVDHQL 360 RQQRALQQLG MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR 420 SQVSNWFINA RVRLWKPMVE EMYLEEIKEN ELNGSSEKMS KSNEDSASKS TPPQERSPAT 480 DQNHTNSTFN SKQENSTNHA PPSMSISSAS TSPTNIVRNQ SGFSLIGSSE LDGITQGSPK 540 KPRSTELMQS PNSIMNHMDV KPQEVSNEHV SMKYGDERQS RDGYSFMGGQ TNFIGSFGQY 600 PIGEIGRFDA DQFTPRFSGN GVSLTLGLPH CENLSLSGAH HQTFLPNQNI QLGRRVDHIG 660 EPNDQFGTLN TSAPHSSAGF ESIDIQNRKR FVAQLLPDFV A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MATYFHGNSD IQSPDGGLQT LVLMNHGGYV QYSDTTQQQQ QSPSAATNQL VFLNSAAAAA  60
NSLAQGPTLP HAPPSHTQQF VGIPLPTVSS QDPSNSQSMQ PHHDMAALHA FMPRIQTQYA  120
LWNSIDPSAR DTPRAQQGLS LSLSSQQPGF GSFRGADREV TTAGEDIRVS SGSNSSASGV  180
TNGVSGMQSV LLSSKYLKAA QELLDEVVNV GNGIRTELPK KGNGNPGKNM AESSMAAAGD  240
GSVAGDQDSG KRALELSTAE RQEIQMKKGK LISMLDEVDQ RYRQYHRQMQ MVISSFEQAA  300
GIGSARTYTA LALQTISKQF RCLKDAITNQ IRAANKSLGE EDCGGGKIEG SRLKYVDHQL  360
RQQRALQQLG MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR  420
SQVSNWFINA RVRLWKPMVE EMYLEEIKEN ELNGSSEKMS KSNEDSASKS TPPQERSPAT  480
DQNHTNSTFN SKQENSTNHA PPSMSISSAS TSPTNIVRNQ SGFSLIGSSE LDGITQGSPK  540
KPRSTELMQS PNSIMNHMDV KPQEVSNEHV SMKYGDERQS RDGYSFMGGQ TNFIGSFGQY  600
PIGEIGRFDA DQFTPRFSGN GVSLTLGLPH CENLSLSGAH HQTFLPNQNI QLGRRVDHIG  660
EPNDQFGTLN TSAPHSSAGF ESIDIQNRKR FVAQLLPDFV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.1	1e-154	TALE family protein