PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06673
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 222aa    MW: 24323.2 Da    PI: 8.9023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06673genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-203785355
          AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  Ro06_G06673 37 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 85
                 8*******.**********883....5*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MRRAARATAA ANQSPSCKKP RPASPKTTPS QQPQIRFRGV RKRPWGRFAA EIRDPWKKTR  60
VWLGTFDSAE DAARAYDAAA RSLRGPKAKT NFSLPCDPFY GGDFNDDAIC SKIDVIQASR  120
PTSSSLSSTV ESFSGPRVNS GKPPPMKPTQ RRPVYPVSPD DCHSDCDSSS SVVDDGDDCV  180
LTSSFRRVLP FDLNMPPPMD GLDLCGDVDD DDLRATALTR TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.15e-24ERF family protein