PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G05705
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Nin-like
Protein Properties Length: 282aa    MW: 32808.3 Da    PI: 5.856
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G05705genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.45.9e-23106153552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  +s e++skyF++p+++AAke++v++T+LK +CR++G +RWP+Rk+ sl
  Ro06_G05705 106 LSKETISKYFYMPLEKAAKEMNVGTTLLKTRCRELGFSRWPYRKLISL 153
                  7899****************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MERDEDDLIS FTNQLPPLDL NRYVPPEWHY ELRQTDDIIS GNGLGNGLFA ASESYNDQQQ  60
VSLIFNDDEV IDGVKHDSRK MNKVISTHGT YNKEEESSSS RPRIMLSKET ISKYFYMPLE  120
KAAKEMNVGT TLLKTRCREL GFSRWPYRKL ISLQNLIKNI QAAGKELEYS VESLEREMKL  180
IEEDPDRELS DDTKRLRQIC SSKPSKSKML SIETISQYFY MQISQAAKEM NELGKKEEDL  240
ELLEKERKLI EEVPDLKLDE KTKRLRHACF KAKSCTRSKT VC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-32Nin-like family protein