PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G18790.1 | ||||||||
Common Name | AtRKD1, F6A14.11, RKD1, URP5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 269aa MW: 30637.8 Da PI: 9.0184 | ||||||||
Description | RWP-RK domain-containing protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.2 | 2.5e-26 | 125 | 175 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s e++s yF++pi++AA+eL+++lT+LK++CR++GIkRWPhRk+ sl AT1G18790.1 125 SKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSL 175 5899********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.007 | 106 | 195 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.0E-21 | 127 | 175 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MKSFCKLEYD QVFGKENNSF SFLNHSSLYS HQSELANPFF ELEDEMLPSA TSSNCFTSAS 60 SFLALPDLEP ISIVSHEADI LSVYGSASWT AEETMFVSDF AKKSETTTTK KRRCREECFS 120 SCSVSKTLSK ETISLYFYMP ITQAARELNI GLTLLKKRCR ELGIKRWPHR KLMSLQKLIS 180 NVKELEKMEG EENEDKLRNA LEKLEKEKKT IEKLPDLKFE DKTKRLRQAC FKANHKRKRR 240 SGMSTPITSS SSSASASSSS YSSVSGFER |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18394654 | 0.0 | ||||
Expression Atlas | AT1G18790 | - | ||||
AtGenExpress | AT1G18790 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G18790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G18790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011809 | 1e-179 | AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-179 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173314.1 | 0.0 | RWP-RK domain-containing protein | ||||
Swissprot | Q9M9U9 | 0.0 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A178WHM2 | 0.0 | A0A178WHM2_ARATH; URP5 | ||||
STRING | AT1G18790.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 | Representative plant | OGRP567 | 17 | 77 |
Link Out ? help Back to Top | |
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Phytozome | AT1G18790.1 |
Entrez Gene | 838461 |
iHOP | AT1G18790 |
wikigenes | AT1G18790 |
Publications ? help Back to Top | |||
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