PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G05663

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 512aa MW: 56673 Da PI: 7.9279

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G05663	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.2	1.4e-32	212	268	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d+++++i+Y+g+Hnh Ro06_G05663 212 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGHITQIVYKGSHNHA 268 8**************************************.*************7 PP
2	WRKY	106.1	1.8e-33	377	435	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d ++v++tYeg+Hnh+ Ro06_G05663 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASHDMRAVITTYEGKHNHD 435 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MTSSFTHLLT SNMNMNNFDQ DRTGSWNWGL TDRNGAEVPK FKSLQPPSLP LSPAPASPSS 60 YLVNTPAFSP TDFLSSPMIF GNSNTLPSPT TGAFSSQVFD WMSNSKDTDQ QGVEKENKLF 120 SDFSFQPAAA SSSSFNLQSS SSMVSSVEES LKSQQQQAWD FNKIPRQEET AAEKTEVKSE 180 FAPSQSFNAA PKSDYTHCTT HSTQYVREQK SDDGYNWRKY GQKQVKGSEN PRSYYKCTFP 240 SCPTKKKVER SLDGHITQIV YKGSHNHAKP QSTRRSASQQ QSLQTSYAVS DQSAPTITNP 300 KIEGITLQED SNSASIGEDE FEQNSPISNS NGADDDNEPE AKRWKGENAN ETYATSGSRI 360 VKEPRIVVQT TSEIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSTGCPV RKHVERASHD 420 MRAVITTYEG KHNHDVPAAR GSAGYGANTR PASDTNRNSN VSVAAVRPLA LPNHSNNLSY 480 LSSLQKQPTS ESQSPYTLKM LQNSGSYGFS EF

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MTSSFTHLLT SNMNMNNFDQ DRTGSWNWGL TDRNGAEVPK FKSLQPPSLP LSPAPASPSS  60
YLVNTPAFSP TDFLSSPMIF GNSNTLPSPT TGAFSSQVFD WMSNSKDTDQ QGVEKENKLF  120
SDFSFQPAAA SSSSFNLQSS SSMVSSVEES LKSQQQQAWD FNKIPRQEET AAEKTEVKSE  180
FAPSQSFNAA PKSDYTHCTT HSTQYVREQK SDDGYNWRKY GQKQVKGSEN PRSYYKCTFP  240
SCPTKKKVER SLDGHITQIV YKGSHNHAKP QSTRRSASQQ QSLQTSYAVS DQSAPTITNP  300
KIEGITLQED SNSASIGEDE FEQNSPISNS NGADDDNEPE AKRWKGENAN ETYATSGSRI  360
VKEPRIVVQT TSEIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSTGCPV RKHVERASHD  420
MRAVITTYEG KHNHDVPAAR GSAGYGANTR PASDTNRNSN VSVAAVRPLA LPNHSNNLSY  480
LSSLQKQPTS ESQSPYTLKM LQNSGSYGFS EF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-113	WRKY family protein