PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G05630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 1056aa    MW: 119826 Da    PI: 4.3873
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G05630genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.53.8e-401585242367
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL ++Aea++ g++ l + +L  +se +sp g++++Rla+ + +     ++++ ++ ++ l+ ++      ++  aa+  + + +P+  f+h +aN
  Ro06_G05630 158 RHLLQAFAEAMEYGQKDLEEVILRCISEKVSPIGESFERLAFNLCQ----EVVDEHQQGSDYLKQESF-----KNFGAAF-KLIQNFPYAWFAHHVAN 245
                  89***************************************98654....555533334444433333.....3444444.477889*********** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +aIlea+  + e vHi+Dfd+++G+Q   +++ La+R +   +l++T+++ +e++      + + eet+++L++ A+++g++++ + +   +ledl +
  Ro06_G05630 246 SAILEAIPVDaEIVHIVDFDMGEGVQLSQIIEDLAQRFK---TLQVTAIKWEEEEsdcapPHWRFEETKKQLQNHARSFGLNLKVEEV---ALEDL-V 336
                  *******9886888***********************66...5******99887788999999***********************98...67777.4 PP

         GRAS 192 eeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqeadh...nsesFlerflealeyysalfdsl 271
                  +e++  +     +E la n++++l ++ +    ++ +  e+L+l k+l ++          ++++ + +ad    n++sF   f e l +y al++s+
  Ro06_G05630 337 SEIKKTKkrgggKEFLAFNCMVSLPHMRR--RRSRRHVMEFLRLAKELLANsgnsktskrgIITFGDGDADQklgNHSSFSSFFNENLGHYQALLESM 432
                  555333336788***************83..33344479*******9965444444555669****999886668999******************** PP

         GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpL 367
                  e ++p +  e+r+++E  +l++ i++    ++    ++  +++ W      +G++  +ls+++ ++ak ++    s g r+e ++++++vl W++ pL
  Ro06_G05630 433 ELNFPDHLaEARMVMEYIFLAPCISSQAWFQKWTEMKEDCHVQPW------FGLEGQRLSKENLMEAKEIVGDERSYGIRIEgQNENEMVLEWRGTPL 524
                  ****998779***************99999999888888889999......8******************************778999*******999 PP

2GRAS124.31.4e-3867610522374
         GRAS    2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96  
                   ++lL + Ae +++g++ l + +L  +se + p g ++++Rla+ + + +    ++      + +     +++  ++   a+klf++ +P+ +f+h 
  Ro06_G05630  676 RHLLRAYAESMENGQKVLEEVILRCISEKVGPIGqTNLERLAFNLCQEIVDDQQG----PDDYI-----KQECFKNFELAFKLFYQNFPYGRFAHN 762 
                   799999***********************999998899****9866544444444....33323.....333356777899*************** PP

         GRAS   97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrl 186 
                   +aN+aIlea+  + e+vHi+Dfd+++G+Q   +++aLa+R +    l++T+++ +e++      + + eet+++L++ A++lg++++ + +   ++
  Ro06_G05630  763 AANSAILEAIPVDvETVHIVDFDMGEGVQLSQIIEALAQRLKT---LKVTAIKWEEEEsdcapPHWRFEETKKQLQSHARSLGLNLKVEEI---AI 852 
                   **********9999**************************765...******99887788999999***********************99...55 PP

         GRAS  187 edleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe.adh..nsesFlerflealeyys 265 
                   edl  e  ++k+    +E la n++++l ++ +++    s+  e+ +l k++          +  +v++ + + ++   +++sF   +   l +y 
  Ro06_G05630  853 EDLVGEIKKTKKrgggREFLAFNCMVSLPHMRRRRSR--SHVMEFQRLAKDMlansgnsntrKTGIVTFGDGDpCQKvgENSSFSSYLDGNLVHYQ 946 
                   56632222333355779***********999843332..22344444444432221111111456******998555567889************* PP

         GRAS  266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslv 359 
                   al++s+e ++p++  e+ +++E  ++++ +++    ++ +     et++  + + + +G+++ +ls+++ ++ak ++   +s g r+  ++ +++ 
  Ro06_G05630  947 ALLESMELNFPSHLaEAGMVMECIFVAPYVSSQAWFQQWR-----ETKQDCHVQPQWFGLESRRLSKENLMEAKEIIGDASSYGVRIGgQNGNEMA 1037
                   ***********99868888999998888888766666554.....5555566666669*****************************955566777 PP

         GRAS  360 lgWkdrpLvsvSaWr 374 
                   l W+++pLv vS W+
  Ro06_G05630 1038 LEWRGNPLVRVSTWE 1052
                   **************5 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    
MEYSALLETS WPFQNLIDSS FDPSDFINMD DTQMDNSNFS SLFINSNEFS EFSEISSYPF  60
ANLFSGDDLI QVTSQVEQVP MDLEGFEANL MIEGFYGNSL EESEGSFPSQ QVSIEGNDVW  120
SLNSIVTSEA SSMDSTSIQS PLTLPREEEG IDNELSIRHL LQAFAEAMEY GQKDLEEVIL  180
RCISEKVSPI GESFERLAFN LCQEVVDEHQ QGSDYLKQES FKNFGAAFKL IQNFPYAWFA  240
HHVANSAILE AIPVDAEIVH IVDFDMGEGV QLSQIIEDLA QRFKTLQVTA IKWEEEESDC  300
APPHWRFEET KKQLQNHARS FGLNLKVEEV ALEDLVSEIK KTKKRGGGKE FLAFNCMVSL  360
PHMRRRRSRR HVMEFLRLAK ELLANSGNSK TSKRGIITFG DGDADQKLGN HSSFSSFFNE  420
NLGHYQALLE SMELNFPDHL AEARMVMEYI FLAPCISSQA WFQKWTEMKE DCHVQPWFGL  480
EGQRLSKENL MEAKEIVGDE RSYGIRIEGQ NENEMVLEWR GTPLPSWPFQ NLINSPFDQS  540
DIMNTQMGSS DFSSLFINSD EFSDLSETFS YPFAALFSGD DLMQVTSRVE EFPMNLEEFD  600
PNLMIDSLYG NFLGGSEGSF PSQQVSSQQF SIEGDDAWSP NSLVTSEASS VDSTSIQTSL  660
TLPRAEVEIH NESSIRHLLR AYAESMENGQ KVLEEVILRC ISEKVGPIGQ TNLERLAFNL  720
CQEIVDDQQG PDDYIKQECF KNFELAFKLF YQNFPYGRFA HNAANSAILE AIPVDVETVH  780
IVDFDMGEGV QLSQIIEALA QRLKTLKVTA IKWEEEESDC APPHWRFEET KKQLQSHARS  840
LGLNLKVEEI AIEDLVGEIK KTKKRGGGRE FLAFNCMVSL PHMRRRRSRS HVMEFQRLAK  900
DMLANSGNSN TRKTGIVTFG DGDPCQKVGE NSSFSSYLDG NLVHYQALLE SMELNFPSHL  960
AEAGMVMECI FVAPYVSSQA WFQQWRETKQ DCHVQPQWFG LESRRLSKEN LMEAKEIIGD  1020
ASSYGVRIGG QNGNEMALEW RGNPLVRVST WENQSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-21GRAS family protein