PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G05630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | GRAS | ||||||||
Protein Properties | Length: 1056aa MW: 119826 Da PI: 4.3873 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 129.5 | 3.8e-40 | 158 | 524 | 2 | 367 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL ++Aea++ g++ l + +L +se +sp g++++Rla+ + + ++++ ++ ++ l+ ++ ++ aa+ + + +P+ f+h +aN Ro06_G05630 158 RHLLQAFAEAMEYGQKDLEEVILRCISEKVSPIGESFERLAFNLCQ----EVVDEHQQGSDYLKQESF-----KNFGAAF-KLIQNFPYAWFAHHVAN 245 89***************************************98654....555533334444433333.....3444444.477889*********** PP GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 +aIlea+ + e vHi+Dfd+++G+Q +++ La+R + +l++T+++ +e++ + + eet+++L++ A+++g++++ + + +ledl + Ro06_G05630 246 SAILEAIPVDaEIVHIVDFDMGEGVQLSQIIEDLAQRFK---TLQVTAIKWEEEEsdcapPHWRFEETKKQLQNHARSFGLNLKVEEV---ALEDL-V 336 *******9886888***********************66...5******99887788999999***********************98...67777.4 PP GRAS 192 eeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqeadh...nsesFlerflealeyysalfdsl 271 +e++ + +E la n++++l ++ + ++ + e+L+l k+l ++ ++++ + +ad n++sF f e l +y al++s+ Ro06_G05630 337 SEIKKTKkrgggKEFLAFNCMVSLPHMRR--RRSRRHVMEFLRLAKELLANsgnsktskrgIITFGDGDADQklgNHSSFSSFFNENLGHYQALLESM 432 555333336788***************83..33344479*******9965444444555669****999886668999******************** PP GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpL 367 e ++p + e+r+++E +l++ i++ ++ ++ +++ W +G++ +ls+++ ++ak ++ s g r+e ++++++vl W++ pL Ro06_G05630 433 ELNFPDHLaEARMVMEYIFLAPCISSQAWFQKWTEMKEDCHVQPW------FGLEGQRLSKENLMEAKEIVGDERSYGIRIEgQNENEMVLEWRGTPL 524 ****998779***************99999999888888889999......8******************************778999*******999 PP | |||||||
2 | GRAS | 124.3 | 1.4e-38 | 676 | 1052 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL + Ae +++g++ l + +L +se + p g ++++Rla+ + + + ++ + + +++ ++ a+klf++ +P+ +f+h Ro06_G05630 676 RHLLRAYAESMENGQKVLEEVILRCISEKVGPIGqTNLERLAFNLCQEIVDDQQG----PDDYI-----KQECFKNFELAFKLFYQNFPYGRFAHN 762 799999***********************999998899****9866544444444....33323.....333356777899*************** PP GRAS 97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrl 186 +aN+aIlea+ + e+vHi+Dfd+++G+Q +++aLa+R + l++T+++ +e++ + + eet+++L++ A++lg++++ + + ++ Ro06_G05630 763 AANSAILEAIPVDvETVHIVDFDMGEGVQLSQIIEALAQRLKT---LKVTAIKWEEEEsdcapPHWRFEETKKQLQSHARSLGLNLKVEEI---AI 852 **********9999**************************765...******99887788999999***********************99...55 PP GRAS 187 edleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe.adh..nsesFlerflealeyys 265 edl e ++k+ +E la n++++l ++ +++ s+ e+ +l k++ + +v++ + + ++ +++sF + l +y Ro06_G05630 853 EDLVGEIKKTKKrgggREFLAFNCMVSLPHMRRRRSR--SHVMEFQRLAKDMlansgnsntrKTGIVTFGDGDpCQKvgENSSFSSYLDGNLVHYQ 946 56632222333355779***********999843332..22344444444432221111111456******998555567889************* PP GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslv 359 al++s+e ++p++ e+ +++E ++++ +++ ++ + et++ + + + +G+++ +ls+++ ++ak ++ +s g r+ ++ +++ Ro06_G05630 947 ALLESMELNFPSHLaEAGMVMECIFVAPYVSSQAWFQQWR-----ETKQDCHVQPQWFGLESRRLSKENLMEAKEIIGDASSYGVRIGgQNGNEMA 1037 ***********99868888999998888888766666554.....5555566666669*****************************955566777 PP GRAS 360 lgWkdrpLvsvSaWr 374 l W+++pLv vS W+ Ro06_G05630 1038 LEWRGNPLVRVSTWE 1052 **************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1056 aa Download sequence |
MEYSALLETS WPFQNLIDSS FDPSDFINMD DTQMDNSNFS SLFINSNEFS EFSEISSYPF 60 ANLFSGDDLI QVTSQVEQVP MDLEGFEANL MIEGFYGNSL EESEGSFPSQ QVSIEGNDVW 120 SLNSIVTSEA SSMDSTSIQS PLTLPREEEG IDNELSIRHL LQAFAEAMEY GQKDLEEVIL 180 RCISEKVSPI GESFERLAFN LCQEVVDEHQ QGSDYLKQES FKNFGAAFKL IQNFPYAWFA 240 HHVANSAILE AIPVDAEIVH IVDFDMGEGV QLSQIIEDLA QRFKTLQVTA IKWEEEESDC 300 APPHWRFEET KKQLQNHARS FGLNLKVEEV ALEDLVSEIK KTKKRGGGKE FLAFNCMVSL 360 PHMRRRRSRR HVMEFLRLAK ELLANSGNSK TSKRGIITFG DGDADQKLGN HSSFSSFFNE 420 NLGHYQALLE SMELNFPDHL AEARMVMEYI FLAPCISSQA WFQKWTEMKE DCHVQPWFGL 480 EGQRLSKENL MEAKEIVGDE RSYGIRIEGQ NENEMVLEWR GTPLPSWPFQ NLINSPFDQS 540 DIMNTQMGSS DFSSLFINSD EFSDLSETFS YPFAALFSGD DLMQVTSRVE EFPMNLEEFD 600 PNLMIDSLYG NFLGGSEGSF PSQQVSSQQF SIEGDDAWSP NSLVTSEASS VDSTSIQTSL 660 TLPRAEVEIH NESSIRHLLR AYAESMENGQ KVLEEVILRC ISEKVGPIGQ TNLERLAFNL 720 CQEIVDDQQG PDDYIKQECF KNFELAFKLF YQNFPYGRFA HNAANSAILE AIPVDVETVH 780 IVDFDMGEGV QLSQIIEALA QRLKTLKVTA IKWEEEESDC APPHWRFEET KKQLQSHARS 840 LGLNLKVEEI AIEDLVGEIK KTKKRGGGRE FLAFNCMVSL PHMRRRRSRS HVMEFQRLAK 900 DMLANSGNSN TRKTGIVTFG DGDPCQKVGE NSSFSSYLDG NLVHYQALLE SMELNFPSHL 960 AEAGMVMECI FVAPYVSSQA WFQQWRETKQ DCHVQPQWFG LESRRLSKEN LMEAKEIIGD 1020 ASSYGVRIGG QNGNEMALEW RGNPLVRVST WENQSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 6e-21 | GRAS family protein |