PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G08250.1
Common NameSCL26, T12G13.90
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 483aa    MW: 53538.4 Da    PI: 5.0037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G08250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.98.4e-1071044761373
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilk 92 
                  lv+lL+++A+a +  +++  l++ +Larl++l+sp + ++m+Rlaa+ft++L++ l r      +++ + ++++++   ++++++a++l++++sP+++
  AT4G08250.1 104 LVHLLVAAADASTGANKSreLTRVILARLKDLVSPGDrTNMERLAAHFTNGLSKLLER------DSVLCPQQHRDDvydQADVISAFELLQNMSPYVN 195
                  689********9986665459**************9989*******************......44544444444446699***************** PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                  f++lta qaIleav+ e+r+Hi+D+di++G+QW++L+qaL sR+ gp   +lRiT+++++++g  s  +++etg+rL+ fA+++g pf+++     ++
  AT4G08250.1 196 FGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLMQALVSRNTGPSaqHLRITALSRATNGkkSVAAVQETGRRLTAFADSIGQPFSYQH-CKLDT 292
                  ********************************************765446*********999999999***********************9.6889* PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseeri 283
                  +++++++L++ +gEa+++n++l+l r+ +++ s+     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+l+ ++ +r 
  AT4G08250.1 293 NAFSTSSLKLVRGEAVVINCMLHLPRFSHQTPSSVI---SFLSEAKTLNPKLVTLVHEEVGLmGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANPARG 387
                  ****************************99888888...**********************99*********************************** PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                  +vEr+++g+++ n+++  +a+  ++ e++++W ++le+ GFkp+++s ++ +qaklll+ ++ dg+rvee  ++ lvlgWk+r+Lvs+S+W
  AT4G08250.1 388 FVERVFIGPWVANWLTRITAN-DAEVESFASWPQWLETNGFKPLEVSFTNRCQAKLLLSLFN-DGFRVEELgQNGLVLGWKSRRLVSASFW 476
                  ******************999.999*************************************.******98789999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.36278457IPR005202Transcription factor GRAS
PfamPF035142.9E-104104476IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.802.4E-4135215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME  60
PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK GLRLVHLLVA AADASTGANK  120
SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV  180
ISAFELLQNM SPYVNFGYLT ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT  240
GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL  300
KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR  360
FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN WLTRITANDA EVESFASWPQ  420
WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ  480
TNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-4412847640377Protein SCARECROW
5b3h_D8e-4412847640377Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184130970.0
Genevisible255125_at0.0
Expression AtlasAT4G08250-
AtGenExpressAT4G08250-
ATTED-IIAT4G08250-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G08250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G08250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0802520.0AL080252.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T12G13, partial sequence (ESSA project).
GenBankAL1615100.0AL161510.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192565.10.0GRAS family transcription factor
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A178UYV90.0A0A178UYV9_ARATH; Uncharacterized protein
STRINGAT4G08250.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Representative plantOGRP68391319
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Bolle C
    The role of GRAS proteins in plant signal transduction and development.
    Planta, 2004. 218(5): p. 683-92
    [PMID:14760535]
  3. Tian C,Wan P,Sun S,Li J,Chen M
    Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
    Plant Mol. Biol., 2004. 54(4): p. 519-32
    [PMID:15316287]
  4. Gao MJ,Parkin I,Lydiate D,Hannoufa A
    An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase.
    Plant Mol. Biol., 2004. 55(3): p. 417-31
    [PMID:15604690]
  5. Barakat A,Wall PK,Diloreto S,Depamphilis CW,Carlson JE
    Conservation and divergence of microRNAs in Populus.
    BMC Genomics, 2007. 8: p. 481
    [PMID:18166134]
  6. Lee MH, et al.
    Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 2008. 67(6): p. 659-70
    [PMID:18500650]