PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G05589
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 308aa    MW: 36197.7 Da    PI: 6.749
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G05589genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.61.1e-2556137185
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                  +W+ qe+++Li++r e+++++ ++k++k+lWe ++ km+++g +rs++qCk+kw+nl +ryk +++ e +     ++++p+f++l
  Ro06_G05589  56 QWSIQETKELITIRAELDQTFMETKRNKQLWEVIATKMKDKGHNRSAEQCKCKWKNLVTRYKGCETAEAEA---MRQQFPFFNDL 137
                  7********************************************************************85...56689****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MDGHYPHHLH QHQQQQQELH QFQLQQQFQV LPPPQQHHHL SPPITVHVDA SDRFPQWSIQ  60
ETKELITIRA ELDQTFMETK RNKQLWEVIA TKMKDKGHNR SAEQCKCKWK NLVTRYKGCE  120
TAEAEAMRQQ FPFFNDLATI MATRDQRMVW AEADGAGAAS GSKKKAAATS LSSDEDEEDN  180
EDSEEAGEKV IAARKKKKVM KMGNIGSSSA SGMGVVGNNV KEILDDFMRQ QLRLDMQWRE  240
EFQARENERR MREYEWRQTM EALENERLMM ERSWREREEQ RRMREEARAE KRDALLTALL  300
DKLNRGDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-53Trihelix family protein